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Basic information

CohesinDB ID: CDBP00417788

Locus: chr21-34622856-34623945

Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116, HSPC, RPE

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 40%, "15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, SMC1A, ZNF263, EBF1, SIN3A, ZFX, ZNF534, WT1, STAT1, FOXA1, MLLT3, MEF2C, SUZ12, ZNF513, ERG, YY1, RELA, MCM5, MYC, RUNX3, TCF4, GRHL3, PAX5, SPIB, IKZF1, VDR, CEBPB, JMJD1C, TRIM28, KMT2A, ESR1, MLL, CTCF, TCF12, JUN, SPI1, BCL11A, AR, DPF2, TRIM24, IRF4, IKZF2, BRD4, CLOCK, MAZ, KMT2B, STAG1, EED

Target gene symbol (double-evidenced CRMs): RUNX1,MRPS6,AP000311.1,RCAN1,ITSN1,AP000295.1,ATP5PO,SLC5A3,SMIM11A,IFNAR2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene: ENSG00000249624, ENSG00000159110, ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000198743, ENSG00000205670, ENSG00000159200, ENSG00000159216,

eachgene

Deatailed information for cohesin site CDBP00417788