- Basic information
- CohesinDB ID: CDBP00417789
- Locus: chr21-34627743-34628123
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 51%,
"14_ReprPCWk": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: LYL1, DDX5, ZFX, FOXA1, TAL1, PHOX2B, CTCF, SPI1
- Target gene symbol (double-evidenced CRMs): SMIM11A,AP000311.1,MRPS6,ITSN1,RCAN1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33200000-33225000~~chr21:34600000-34625000,
chr21:33675000-33700000~~chr21:34600000-34625000,
chr21:33700000-33725000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33925000-33950000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:34050000-34075000~~chr21:34600000-34625000,
chr21:34100000-34125000~~chr21:34600000-34625000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34150000-34175000~~chr21:34600000-34625000,
chr21:34200000-34225000~~chr21:34600000-34625000,
chr21:34300000-34325000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34350000-34375000~~chr21:34600000-34625000,
chr21:34350000-34375000~~chr21:34625000-34650000,
chr21:34360466-34363118~~chr21:34629724-34631850,
chr21:34360469-34363186~~chr21:34629535-34631912,
chr21:34360481-34363035~~chr21:34629707-34631944,
chr21:34360738-34363146~~chr21:34629695-34631822,
chr21:34360816-34363118~~chr21:34629714-34631894,
chr21:34361194-34362922~~chr21:34629718-34631638,
chr21:34361195-34362791~~chr21:34629715-34631594,
chr21:34361196-34363023~~chr21:34629772-34631610,
chr21:34361198-34363034~~chr21:34629528-34631714,
chr21:34361206-34363004~~chr21:34629693-34631699,
chr21:34361208-34362935~~chr21:34629754-34631604,
chr21:34361209-34363099~~chr21:34629560-34631658,
chr21:34361210-34363114~~chr21:34629958-34631796,
chr21:34361281-34362787~~chr21:34629952-34631423,
chr21:34366756-34368545~~chr21:34629560-34631658,
chr21:34366762-34368585~~chr21:34629714-34631894,
chr21:34366789-34368462~~chr21:34629724-34631850,
chr21:34366803-34368417~~chr21:34629516-34631784,
chr21:34366854-34368356~~chr21:34629657-34631644,
chr21:34366856-34368482~~chr21:34629869-34631575,
chr21:34366866-34368178~~chr21:34630024-34631895,
chr21:34366877-34368476~~chr21:34629552-34632018,
chr21:34366893-34368392~~chr21:34629528-34631714,
chr21:34366895-34368186~~chr21:34630001-34631676,
chr21:34366900-34368462~~chr21:34629794-34631884,
chr21:34500000-34525000~~chr21:34600000-34625000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34508615-34511741~~chr21:34629492-34631931,
chr21:34508630-34511686~~chr21:34629744-34631944,
chr21:34508655-34511778~~chr21:34629535-34631912,
chr21:34508680-34511707~~chr21:34629707-34631944,
chr21:34508793-34511654~~chr21:34629528-34631714,
chr21:34509547-34511623~~chr21:34629718-34631638,
chr21:34509944-34511541~~chr21:34629772-34631610,
chr21:34600000-34625000~~chr21:34875000-34900000,
chr21:34600000-34625000~~chr21:37250000-37275000,
chr21:34625000-34650000~~chr21:35925000-35950000,
chr21:34625000-34650000~~chr21:35950000-35975000,
chr21:7750000-7775000~~chr21:34600000-34625000,
chr21:7750000-7775000~~chr21:34625000-34650000,
chr21:7800000-7825000~~chr21:34600000-34625000,
chr21:7800000-7825000~~chr21:34625000-34650000,