- Basic information
- CohesinDB ID: CDBP00417790
- Locus: chr21-34628717-34635854
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, T-47D, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 80% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.133
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 40%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM28, POU5F1, NME2, FOXA1, BAHD1, ZNF143, MNT
- Target gene symbol (double-evidenced CRMs): ITSN1,SMIM11A,RCAN1,AP000311.1,ATP5PO,MRPS6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33200000-33225000~~chr21:34600000-34625000,
chr21:33675000-33700000~~chr21:34600000-34625000,
chr21:33700000-33725000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33925000-33950000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34600000-34625000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:34050000-34075000~~chr21:34600000-34625000,
chr21:34100000-34125000~~chr21:34600000-34625000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34150000-34175000~~chr21:34600000-34625000,
chr21:34200000-34225000~~chr21:34600000-34625000,
chr21:34300000-34325000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34350000-34375000~~chr21:34600000-34625000,
chr21:34350000-34375000~~chr21:34625000-34650000,
chr21:34360466-34363118~~chr21:34629724-34631850,
chr21:34360469-34363186~~chr21:34629535-34631912,
chr21:34360481-34363035~~chr21:34629707-34631944,
chr21:34360488-34363116~~chr21:34634839-34636188,
chr21:34360738-34363146~~chr21:34629695-34631822,
chr21:34360816-34363118~~chr21:34629714-34631894,
chr21:34361194-34362922~~chr21:34629718-34631638,
chr21:34361195-34362791~~chr21:34629715-34631594,
chr21:34361196-34363023~~chr21:34629772-34631610,
chr21:34361198-34363034~~chr21:34629528-34631714,
chr21:34361206-34363004~~chr21:34629693-34631699,
chr21:34361208-34362935~~chr21:34629754-34631604,
chr21:34361209-34363099~~chr21:34629560-34631658,
chr21:34361210-34363114~~chr21:34629958-34631796,
chr21:34361281-34362787~~chr21:34629952-34631423,
chr21:34366756-34368545~~chr21:34629560-34631658,
chr21:34366762-34368585~~chr21:34629714-34631894,
chr21:34366789-34368462~~chr21:34629724-34631850,
chr21:34366803-34368417~~chr21:34629516-34631784,
chr21:34366854-34368356~~chr21:34629657-34631644,
chr21:34366856-34368482~~chr21:34629869-34631575,
chr21:34366866-34368178~~chr21:34630024-34631895,
chr21:34366877-34368476~~chr21:34629552-34632018,
chr21:34366893-34368392~~chr21:34629528-34631714,
chr21:34366895-34368186~~chr21:34630001-34631676,
chr21:34366900-34368462~~chr21:34629794-34631884,
chr21:34500000-34525000~~chr21:34600000-34625000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34508615-34511741~~chr21:34629492-34631931,
chr21:34508630-34511686~~chr21:34629744-34631944,
chr21:34508655-34511778~~chr21:34629535-34631912,
chr21:34508680-34511707~~chr21:34629707-34631944,
chr21:34508793-34511654~~chr21:34629528-34631714,
chr21:34509547-34511623~~chr21:34629718-34631638,
chr21:34509944-34511541~~chr21:34629772-34631610,
chr21:34600000-34625000~~chr21:34875000-34900000,
chr21:34600000-34625000~~chr21:37250000-37275000,
chr21:34625000-34650000~~chr21:35925000-35950000,
chr21:34625000-34650000~~chr21:35950000-35975000,
chr21:34640130-34641379~~chr21:34670339-34671972,
chr21:7750000-7775000~~chr21:34600000-34625000,
chr21:7750000-7775000~~chr21:34625000-34650000,
chr21:7800000-7825000~~chr21:34600000-34625000,
chr21:7800000-7825000~~chr21:34625000-34650000,