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Basic information

CohesinDB ID: CDBP00417791

Locus: chr21-34636670-34636905

Data sourse: GSE116344, ENCSR153HNT

Cell type: K-562, RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 48%, "14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFIA, TOP2A, SOX2, ZFX, FOXA1, HLF, SUZ12, PRDM10, RELA, NFIC, RUNX3, PRDM1, SPIB, ZNF143, GATA1, RCOR1, CEBPB, ESRRA, ELF1, TRIM28, LMO2, CTCF, SPI1, AR, ZNF316

Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,SMIM11A,RCAN1,MRPS6,ATP5PO

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000205670, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417791