- Basic information
- CohesinDB ID: CDBP00417792
- Locus: chr21-34638697-34639182
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, FOXA1, PBX2, HDGF, ATF3, NFIC, RUNX3, ATF4, SMARCE1, PAX5, BACH2, MAF, BCLAF1, TRIM28, RBM39, ETV1, NFE2L2, ZNF217, MLL, USF2, JUN, TCF12, EP300, E4F1, MNT, DPF2, SOX4, E2F6, IRF4, CREB3, RAD51, DDX20, E2F1, TEAD4, KMT2B, RBPJ, EED, GLIS1, POU2F2, BRD1, ZSCAN5D, MYCN, CTBP1, MTA2, SAP130, NBN, ERG, HOXC5, MYC, SMARCA4, ARID1B, RAD21, PROX1, RXRA, FOXK2, BATF3, GABPA, NKX2-1, APC, STAT3, IKZF1, LEF1, NFE2, RCOR1, ARNTL, VDR, CEBPB, STAT5B, CREB1, BMPR1A, GRHL2, EBF3, NFE2L1, ZHX2, SPI1, IRF1, HDAC2, GATA2, FLI1, SMARCA5, RELB, EP400, ATF1, MAFG, SMC1A, HDAC1, SIN3A, ZFX, SMAD3, TRIM22, PRDM10, MEF2A, IRF2, CREBBP, RUNX2, CDK6, NRF1, ARNT, BACH1, TFDP1, PBX4, ATF2, ZNF48, ZEB2, FOXM1, ETV6, PBX3, NR2C1, CDK8, FOS, MED1, DIDO1, MYB, C11orf30, L3MBTL2, STAT5A, MAFK, BCL11A, SP1, NIPBL, NR4A1, USF1, REST, ZBTB7A, ATF7, ASH2L, STAT2, MLLT1, STAG1, NFATC3, MEF2B, KLF13, CBX3, MTA3, EBF1, CREM, RBBP5, E2F8, ZBED1, MAFF, GTF2B, ZBTB33, CDK9, BCL3, ZNF318, CREB3L1, YY1, RELA, TARDBP, JUNB, AHR, ZNF148, ZFP36, SKIL, HIF1A, GATA3, BATF, MGA, TAL1, MAX, GATA1, ZNF143, PLAG1, ZNF592, GFI1B, ZNF687, PKNOX1, TP53, ZNF334, TBX21, BHLHE40, AR, PTRF, TAF1, ZBTB40, ZNF324, RB1, RNF2, IKZF2, BRD4, ILF3, JUND, MAZ, IRF9, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): RCAN1,MRPS6,ITSN1,SMIM11A,AP000311.1,ATP5PO
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000243927,
ENSG00000205670,
ENSG00000159200,
- Related loop:
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34350000-34375000~~chr21:34625000-34650000,
chr21:34360488-34363116~~chr21:34634839-34636188,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34625000-34650000~~chr21:35925000-35950000,
chr21:34625000-34650000~~chr21:35950000-35975000,
chr21:34640130-34641379~~chr21:34670339-34671972,
chr21:7750000-7775000~~chr21:34625000-34650000,
chr21:7800000-7825000~~chr21:34625000-34650000,