Browse_each

Basic information

CohesinDB ID: CDBP00417795

Locus: chr21-34644175-34644509

Data sourse: GSE206145, GSE206145-NatGen2015

Cell type: RPE, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 50%, "15_Quies": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZSCAN5D, ZSCAN5C, ZFX, ZBTB48, STAT1, FOXA1, CBX8, ZNF823, MLL4, HOXB13, ERG, RELA, RARA, ZNF384, OGG1, GATA4, GRHL3, DAXX, PROX1, NKX2-1, IKZF1, NR2F6, TEAD3, TEAD1, TP53, ELF3, SPI1, HNF4A, GATA6, SOX5, IKZF5, ZNF644, SIX2, BRD4, MAZ

Target gene symbol (double-evidenced CRMs): RCAN1,ITSN1,MRPS6,SMIM11A,AP000311.1,ATP5PO

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000243927, ENSG00000205670, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417795