- Basic information
- CohesinDB ID: CDBP00417800
- Locus: chr21-34654096-34654547
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RELA, POU2F2, CHD8, ZSCAN5D, CDK6, RUNX1T1, CREB1, ZFX, ZFP36, XBP1, OCA2, ARNT, ZSCAN5A, WT1, ATF2, CTCF, SPIB, ZNF143, STAG1
- Target gene symbol (double-evidenced CRMs): AP000311.1,ITSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
- Related loop:
chr21:33675000-33700000~~chr21:34650000-34675000,
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33950000-33975000~~chr21:34625000-34650000,
chr21:34125000-34150000~~chr21:34625000-34650000,
chr21:34150000-34175000~~chr21:34650000-34675000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34350000-34375000~~chr21:34625000-34650000,
chr21:34500000-34525000~~chr21:34625000-34650000,
chr21:34625000-34650000~~chr21:35925000-35950000,
chr21:34625000-34650000~~chr21:35950000-35975000,
chr21:34650000-34675000~~chr21:35925000-35950000,
chr21:7750000-7775000~~chr21:34625000-34650000,
chr21:7800000-7825000~~chr21:34625000-34650000,