- Basic information
- CohesinDB ID: CDBP00417801
- Locus: chr21-34659701-34660555
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 35%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, POU2F2, CHD8, SMC1A, ZSCAN5D, MYCN, POU5F1, RUNX1T1, KDM4C, ZFX, CRY1, XBP1, TBL1X, ZBTB48, WT1, ZSCAN5A, TET2, YY1, RELA, ZNF90, ATF3, MYC, SP140, GRHL3, PRDM14, ZNF143, ELF1, NR2F1, EZH2, LMO2, ESR1, OCA2, CTCF, AR, HSF1, ZNF263, NOTCH3, BRD4, MAZ, HCFC1R1, SMC3, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops