Browse_each

Basic information

CohesinDB ID: CDBP00417806

Locus: chr21-34678012-34678345

Data sourse: GSE93080, GSE50893

Cell type: GM2630, GM12878

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: NIPBL,SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 62%, "15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, XBP1, TCF7, MLL4, TFAP4, HOXC5, RELA, MEF2A, JUNB, AHR, MYC, RUNX3, PRDM1, PBX4, SKIL, SP140, PROX1, CBFB, BATF, TAL1, PAX5, TP63, SPIB, FOS, MAX, MAF, BCLAF1, SNAI2, EZH2, TP53, C11orf30, ZNF334, JUN, MAFK, SPI1, BCL11A, AR, PAX8, IRF4, BRD4, MLLT1, ZNF316

Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,CLIC6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159212, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00417806