Browse_each

Basic information

CohesinDB ID: CDBP00417810

Locus: chr21-34686620-34687085

Data sourse: GSE67783, GSE86191, GSE165895

Cell type: HCT-116, HSPC, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 42%, "14_ReprPCWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, PPARG, TBL1X, FOXA2, ZFX, XBP1, WT1, FOXA1, BCL3, YY1, RELA, ATF3, RUNX2, GRHL3, PBX4, STAT3, PBX3, NKX3-1, ZNF143, MED1, NR3C1, CEBPB, PDX1, ESR1, CTCF, SPI1, AR, NCOR1, BRD4, SCRT1, TCF3, CLOCK, MAZ, ZNF528, STAG1

Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,CLIC6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159212, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00417810