- Basic information
- CohesinDB ID: CDBP00417812
- Locus: chr21-34692147-34696282
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE168045, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
-
Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, T-47D, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, SC, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, TC-71, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 79% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.144
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 29%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, HMG20A, ZNF660, SOX2, XBP1, FOXA1, MLL4, TFAP4, ATF3, THRB, CTCFL, RUNX3, PRDM1, IKZF3, ZNF189, MITF, CDX2, JMJD1C, TEAD1, ZNF121, KLF6, SNAI2, RBM39, ZNF217, ESR1, OCA2, ZNF561, CTCF, JUN, BAF155, EP300, KLF1, MNT, SOX4, IRF4, RFX5, DEK, ZNF528, SMC1, TEAD4, GTF2F1, PDX1, TFAP2C, EED, GATAD2A, GLIS1, NANOG, POU2F2, MYCN, ZNF263, POU5F1, CDK7, ZNF317, MTA2, ZBTB48, STAT1, SRF, SAP130, DDX5, ERG2, ERG, HOXC5, ASCL1, NFKB2, MYC, SMARCA4, RFX1, RAD21, PROX1, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, IKZF1, NFE2, MIER3, NR2F6, ARNTL, NR3C1, CEBPB, ESRRA, ZNF750, CREB1, EZH2, JMJD6, GRHL2, FEZF1, SPI1, MIXL1, IRF1, HDAC2, GATA2, ZNF182, ZNF644, DRAP1, SMARCA5, ZNF766, RELB, MRTFB, NCOA2, RUNX1, SMC1A, ZBTB24, CEBPA, NKX2-2, EZH2phosphoT487, HDAC1, SIN3A, ZFX, SMAD3, ZNF654, ERG3, TRIM22, SMARCC1, PRDM10, ZXDC, CREBBP, ZNF384, ZBTB2, ZNF35, RUNX2, GATA4, ARNT, PBX4, ATF2, ZEB2, MAFB, FOS, CDK8, CHD1, HMGXB4, MED1, ICE2, SCRT2, PIAS1, SMAD1, ZNF3, NR1H2, KLF9, ZNF22, KLF16, NIPBL, BCL11A, REST, ZBTB7A, ARID1A, ATF7, ZNF605, PHIP, FOXP1, SMC3, STAG1, STAG2, ZNF283, PPARG, FOXA2, ZNF316, CBX3, CREM, SS18, ZNF207, GTF2B, WT1, ZNF574, HOXB13, ZNF580, KDM1A, YY1, RELA, TARDBP, JUNB, SP140, ZFP36, HIF1A, GATA3, BATF, TAL1, MAX, NRIP1, ZNF143, HAND2, TLE3, KLF4, CEBPG, ZFP69B, NCOA3, NR2F2, SP7, GFI1B, TCF7L2, KDM5B, TP53, ZNF687, NFKB1, EGR2, ELF3, PHF5A, TBX21, AR, PAX3-FOXO1, EGLN2, RB1, HSF1, RNF2, NOTCH3, BRD4, ILF3, JUND, IKZF2, SCRT1, MAZ, CLOCK, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1,CLIC6,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 36
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34675000-34700000~~chr21:34800000-34825000,
chr21:34675000-34700000~~chr21:34850000-34875000,
chr21:34675000-34700000~~chr21:34875000-34900000,
chr21:34675000-34700000~~chr21:35400000-35425000,
chr21:34675000-34700000~~chr21:35450000-35475000,
chr21:34675000-34700000~~chr21:35500000-35525000,
chr21:34675000-34700000~~chr21:35575000-35600000,
chr21:34675000-34700000~~chr21:35600000-35625000,
chr21:34675000-34700000~~chr21:35825000-35850000,
chr21:34675000-34700000~~chr21:35850000-35875000,
chr21:34675000-34700000~~chr21:35925000-35950000,
chr21:34675000-34700000~~chr21:35950000-35975000,
chr21:34675000-34700000~~chr21:36025000-36050000,
chr21:34675000-34700000~~chr21:36100000-36125000,
chr21:34692249-34694404~~chr21:35507719-35509586,
chr21:34692384-34694384~~chr21:35615361-35617172,
chr21:34692406-34694411~~chr21:35648041-35649435,
chr21:34692433-34694405~~chr21:35507807-35509535,
chr21:34692471-34694305~~chr21:35399887-35401439,
chr21:34692474-34694411~~chr21:35507809-35509924,
chr21:34692480-34694427~~chr21:35399614-35401619,
chr21:34692573-34694447~~chr21:35399848-35401817,
chr21:34692731-34694389~~chr21:35399881-35401571,
chr21:34700000-34725000~~chr21:34825000-34850000,
chr21:34700000-34725000~~chr21:34850000-34875000,
chr21:34700000-34725000~~chr21:35025000-35050000,
chr21:34700000-34725000~~chr21:35375000-35400000,
chr21:34700000-34725000~~chr21:35400000-35425000,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34700000-34725000~~chr21:35825000-35850000,
chr21:34700000-34725000~~chr21:35925000-35950000,
chr21:34700000-34725000~~chr21:35975000-36000000,
chr21:34700000-34725000~~chr21:36025000-36050000,