- Basic information
- CohesinDB ID: CDBP00417817
- Locus: chr21-34705086-34705452
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 35%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PAX7, PGR, SMARCA2, CEBPA, MYCN, PPARG, CHD2, POU5F1, ZFX, WT1, STAT1, FOXA1, CBX8, HOXB13, SMARCC1, KDM1A, YY1, RELA, JUNB, ATF3, MYC, GATA4, ISL1, TAL1, GATA3, STAT3, PBX3, IRF9, MAX, FOXM1, FOS, RCOR1, TP63, HAND2, MED1, ZNF736, GATA1, NR3C1, CEBPG, CEBPB, KLF4, ELF1, SNAI2, EZH2, ESR1, TP53, TP73, PITX3, NFKB1, EBF3, USF2, PHOX2B, JUN, TCF12, CTCF, EP300, SPI1, NR4A1, AR, GATA6, REST, GATA2, ZNF479, POU2F3, FLI1, RNF2, BRD4, BCOR, MAZ, ZNF350, MRTFB, TEAD4, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): CLIC6,SETD4,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34700000-34725000~~chr21:34825000-34850000,
chr21:34700000-34725000~~chr21:34850000-34875000,
chr21:34700000-34725000~~chr21:35025000-35050000,
chr21:34700000-34725000~~chr21:35375000-35400000,
chr21:34700000-34725000~~chr21:35400000-35425000,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34700000-34725000~~chr21:35825000-35850000,
chr21:34700000-34725000~~chr21:35925000-35950000,
chr21:34700000-34725000~~chr21:35975000-36000000,
chr21:34700000-34725000~~chr21:36025000-36050000,