- Basic information
- CohesinDB ID: CDBP00417819
- Locus: chr21-34710392-34710772
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 54%,
"14_ReprPCWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, ZNF426, ZNF697, ZSCAN5D, ZFX, WT1, ZSCAN5A, DDX5, PBX2, HOXC5, ZNF384, OGG1, DAXX, GRHL3, ZNF518A, FOS, ZNF750, CTCF, FLI1, MAZ, ZC3H11A, ZNF34, STAG1
- Target gene symbol (double-evidenced CRMs): RUNX1,CLIC6,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34700000-34725000~~chr21:34825000-34850000,
chr21:34700000-34725000~~chr21:34850000-34875000,
chr21:34700000-34725000~~chr21:35025000-35050000,
chr21:34700000-34725000~~chr21:35375000-35400000,
chr21:34700000-34725000~~chr21:35400000-35425000,
chr21:34700000-34725000~~chr21:35500000-35525000,
chr21:34700000-34725000~~chr21:35825000-35850000,
chr21:34700000-34725000~~chr21:35925000-35950000,
chr21:34700000-34725000~~chr21:35975000-36000000,
chr21:34700000-34725000~~chr21:36025000-36050000,