Deatailed information for cohesin site CDBP00417824
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00417824
- Locus: chr21-34719317-34720422
- Data sourse: GSE104888, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE121355, GSE131606, GSE108869, GSE25021, ENCSR000BUC, GSE67783, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE138105, GSE116344, ENCSR703TNG, ENCSR000BLS, GSE206145, ENCSR247LSH, ENCSR767DFK, ENCSR495WGO, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, GSE129526, ENCSR335RKQ, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
- Cell type: RH4, GM2610, SLK, HuCC-T1, RPE, GM2630, Fibroblast, HeLa-S3, GM2255, K-562, GM18486, DKO, GM12891, SK-N-SH, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, A-549, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 13% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.778
- Subunit: SA1,Rad21,SMC3,SMC1,SA2,SMC3ac
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 52%,
"14_ReprPCWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: PGR, SMC1A, POU2F2, MTA3, ZFX, NME2, WT1, FOXA1, ERG3, DDX5, ZFHX2, SMARCA4, RAD21, SP140, HIF1A, NKX2-1, MED1, NR3C1, ELF1, ESR1, OCA2, CTCF, AR, NCOR1, CUX1, SMC1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): CLIC6,SETD4,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene: ENSG00000159212, ENSG00000159216, ENSG00000185917,
- Related loop: chr21:34350000-34375000~~chr21:34725000-34750000, chr21:34700000-34725000~~chr21:34825000-34850000, chr21:34700000-34725000~~chr21:34850000-34875000, chr21:34700000-34725000~~chr21:35025000-35050000, chr21:34700000-34725000~~chr21:35375000-35400000, chr21:34700000-34725000~~chr21:35400000-35425000, chr21:34700000-34725000~~chr21:35500000-35525000, chr21:34700000-34725000~~chr21:35825000-35850000, chr21:34700000-34725000~~chr21:35925000-35950000, chr21:34700000-34725000~~chr21:35975000-36000000, chr21:34700000-34725000~~chr21:36025000-36050000, chr21:34718892-34720426~~chr21:35507719-35509586, chr21:34722039-34723826~~chr21:35507813-35509465, chr21:34722101-34723694~~chr21:35615336-35617186, chr21:34725000-34750000~~chr21:34825000-34850000, chr21:34725000-34750000~~chr21:34850000-34875000, chr21:34725000-34750000~~chr21:34875000-34900000, chr21:34725000-34750000~~chr21:35025000-35050000, chr21:34725000-34750000~~chr21:35200000-35225000, chr21:34725000-34750000~~chr21:35400000-35425000, chr21:34725000-34750000~~chr21:35500000-35525000, chr21:34725000-34750000~~chr21:35600000-35625000, chr21:34725000-34750000~~chr21:35825000-35850000, chr21:34725000-34750000~~chr21:35925000-35950000, chr21:34725000-34750000~~chr21:36025000-36050000,
Tools:
- Assay
