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Basic information

CohesinDB ID: CDBP00417831

Locus: chr21-34732355-34732995

Data sourse: GSE85526, GSE206145-NatGen2015, ENCSR879KXD, GSE165895

Cell type: K-562, Fibroblast, HEKn, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: Mau2,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 53%, "14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, PGR, SMC1A, FOXA2, MEIS1, ID3, MEIS2, CTBP1, SMAD3, ZNF823, PBX2, KDM1A, JUNB, ATF3, MYC, GATA4, PBX4, GATA3, HMBOX1, STAT3, PBX3, FOS, MED1, KLF4, CEBPB, ZNF750, ESR1, JUN, BCL11A, SPI1, EHF, AR, GATA2, YAP1, BRD4, JUND, ATF1

Target gene symbol (double-evidenced CRMs): SETD4,SMIM11A,RUNX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159216, ENSG00000185917,

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Deatailed information for cohesin site CDBP00417831