- Basic information
- CohesinDB ID: CDBP00417834
- Locus: chr21-34738288-34738793
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Data sourse: GSE116344, GSE67783, ENCSR153HNT
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Cell type: K-562, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 44%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF675, HMG20A, MEIS2, HNF1A, FOXA1, PBX2, RXRB, ZNF90, HDAC3, TEAD1, ELF1, TRIM28, ETV1, ESR1, CTCF, JUN, BAF155, EP300, DPF2, GATAD2A, PDX1, TFAP2C, NANOG, CHD8, ZSCAN5D, MYCN, DUX4, SAP130, ERG, HOXC5, MYC, RAD21, GRHL3, RXRA, GABPA, STAT3, NKX3-1, NR2F6, ARNTL, VDR, NR3C1, CEBPB, ESRRA, CREB1, BPTF, GRHL2, TRPS1, SPI1, EHF, KDM5A, HDAC2, GATA2, ZNF644, NFIL3, RUNX1, BCL6, MAFG, CEBPA, SIN3A, ZFX, SOX13, SMAD3, TWIST1, CREBBP, ZXDC, RARA, RUNX2, GATA4, GR, PBX4, DAXX, ARNT, PRDM9, HMBOX1, SMAD4, PBX3, FOXM1, FOS, MED1, TEAD3, PIAS1, C11orf30, MAFK, SP1, HNF4A, ARID1A, ASH2L, MBD2, FOXP1, STAG1, PPARG, FOXA2, MAFF, HOXB13, KDM1A, RELA, BRG1, MCM3, ZIC2, HIF1A, GATA3, MAX, ZNF143, CBX2, TLE3, CEBPG, NCOA3, NR2F2, TCF7L2, NR2F1, KDM5B, TP53, PKNOX1, ZNF334, ELF3, ZNF765, AR, ZBTB40, YAP1, EGLN2, HSF1, RNF2, BRD4, JUND, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): SETD4,RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:34725000-34750000,
chr21:34725000-34750000~~chr21:34825000-34850000,
chr21:34725000-34750000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34725000-34750000~~chr21:35025000-35050000,
chr21:34725000-34750000~~chr21:35200000-35225000,
chr21:34725000-34750000~~chr21:35400000-35425000,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34725000-34750000~~chr21:35600000-35625000,
chr21:34725000-34750000~~chr21:35825000-35850000,
chr21:34725000-34750000~~chr21:35925000-35950000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34743262-34746775~~chr21:35399352-35402534,
chr21:34743262-34746775~~chr21:35507734-35509545,
chr21:34743265-34746806~~chr21:35507719-35509586,
chr21:34743512-34746717~~chr21:35399678-35401615,