- Basic information
- CohesinDB ID: CDBP00417837
- Locus: chr21-34742716-34748790
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, GSE168045, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, SC, HeLa, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, HUES9, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 85% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.100
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 27%,
"7_Enh": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, HLF, RXRB, MLL4, KDM3A, PAX5, TEAD1, ZNF121, LMO2, ZNF561, E4F1, SOX5, PAX8, DEK, ZNF410, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, TOP2A, BRD3, CTBP1, ERF, DUX4, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, EZH1, SMARCA4, RFX1, RCOR1, DACH1, NR2F6, CEBPB, CREB1, BMPR1A, GABPB1, ZHX2, ELF4, MIXL1, KLF17, ZNF257, GATA2, ZNF644, MXD3, FLI1, DRAP1, HCFC1, NR2C2, ZNF785, RUNX1, HDAC1, NKX2-2, CEBPA, TET2, ZNF654, SP5, TRIM22, SMARCC1, PRDM10, ZXDC, ZBTB2, ELK1, ATF2, FOXM1, SP2, TERF1, PIAS1, SMAD1, MBD1, ARID2, IKZF5, RBM25, ELL2, ETV4, CBFA2T2, CBX3, CREM, CHD2, SS18, WT1, MEF2C, JUNB, NEUROD1, TCF4, ZFP36, BATF, SPIB, KLF4, BCL11B, ZBTB6, ELF3, ARID4B, EGLN2, HSF1, ZBTB26, SCRT1, ILF3, ZNF316, FOSL1, ZNF660, XBP1, PBX2, ATF3, ZC3H8, THRB, ZFP64, RUNX3, CBFB, TP63, ZSCAN4, MITF, JMJD1C, MAF, MYOG, ELF1, ZNF573, RBM39, SNAI2, CTCF, JUN, MNT, DPF2, IRF4, ZNF280A, PDX1, TFAP2C, RBPJ, MLX, ZSCAN21, ZBTB17, ZBTB48, MTA2, NONO, SRF, DDX5, ONECUT1, KDM4A, HOMEZ, RXRA, NKX3-1, MIER3, VDR, NR3C1, ESRRA, STAT5B, KMT2A, CCAR2, TBL1XR1, KLF8, GRHL2, EBF3, ZKSCAN5, SSRP1, NFIL3, CC2D1A, THAP11, SOX13, AFF4, ZMIZ1, ZNF18, ARNT, DAXX, ZNF48, PRDM9, ZEB2, NFYA, PBX3, ETV6, HMGXB4, ICE2, TEAD3, DIDO1, U2AF1, KLF9, SP1, BCL11A, ATF7, ASH2L, SMC3, STAG1, STAG2, MLLT1, ZNF394, MTA3, EBF1, MEIS1, MAFF, ESR2, ZNF580, ZKSCAN1, KDM1A, BRG1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, TP53, NFKB1, PHF5A, BRD2, KAT8, ARRB1, RB1, RNF2, BRD4, JUND, CUX1, PGR, SOX2, PATZ1, TFAP4, SIN3B, BMI1, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ZNF217, ESR1, TP73, KLF1, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5A, ELK4, SP4, TBP, HNF4G, HOXC5, OGG1, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, EZH2, ZNF652, SPI1, HDAC2, NCOA2, ETV5, BCL6, SIN3A, CREBBP, RARA, ZNF35, NFYC, TAF15, ZNF384, SMAD4, ZNF518A, CDK8, ZEB1, ZNF264, SREBF2, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, PPARG, TBL1X, ZNF692, GTF2B, ZNF30, ZNF574, TCF7, FOXO3, RELA, TARDBP, SKIL, MGA, MAX, ZNF592, GFI1B, NR2F1, NEUROG2, KDM5B, TCF7L2, PKNOX1, MYOD1, T, AR, ZNF324, DMAP1, AHR, FOSL2, HMG20A, LCORL, RBFOX2, ZNF90, NFIC, ZNF362, CTCFL, ZNF629, KLF5, BCLAF1, TRIM28, ETV1, RCOR2, HNF1B, TCF12, EP300, BAF155, GATA6, SOX6, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EHMT2, EED, CHD8, MYCN, CDK7, ID3, RUNX1T1, MLLT3, GATAD1, ARID3A, EOMES, RAD21, GRHL3, XRCC5, ZNF614, NFE2, TCF25, ZNF750, JMJD6, TFE3, EHF, HBP1, IRF1, ZGPAT, MRTFB, ZC3H11A, ATF1, PTBP1, SMC1A, ZNF335, ZFX, FIP1L1, SMAD3, TWIST1, IRF2, PRPF4, NOTCH1, RUNX2, CDK6, GATA4, ZNF184, PBX4, NRF1, NR2C1, FOS, CHD1, TGIF2, MED1, KDM6B, MYB, SCRT2, ZNF3, L3MBTL2, KLF16, NIPBL, ZBTB7A, POU2F3, PHIP, TCF3, SKI, FOXA2, ZNF600, MIER2, CDK9, HOXB13, YY1, SP140, HIF1A, OTX2, ZNF449, GATA1, CEBPG, SP7, NCOA3, NR2F2, ZNF687, NFKBIZ, BHLHE40, TAF1, ZBTB40, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1,SETD4
- Function elements
- Human SNPs: Esophageal_cancer
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:34725000-34750000,
chr21:34350000-34375000~~chr21:34750000-34775000,
chr21:34725000-34750000~~chr21:34825000-34850000,
chr21:34725000-34750000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34725000-34750000~~chr21:35025000-35050000,
chr21:34725000-34750000~~chr21:35200000-35225000,
chr21:34725000-34750000~~chr21:35400000-35425000,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34725000-34750000~~chr21:35600000-35625000,
chr21:34725000-34750000~~chr21:35825000-35850000,
chr21:34725000-34750000~~chr21:35925000-35950000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34743262-34746775~~chr21:35399352-35402534,
chr21:34743262-34746775~~chr21:35507734-35509545,
chr21:34743265-34746806~~chr21:35507719-35509586,
chr21:34743512-34746717~~chr21:35399678-35401615,
chr21:34744447-34746791~~chr21:35399674-35401602,
chr21:34744447-34746791~~chr21:35507750-35509614,
chr21:34744498-34746753~~chr21:35399738-35401521,
chr21:34744530-34746777~~chr21:34887476-34892097,
chr21:34744530-34746777~~chr21:35399848-35401817,
chr21:34744530-34746777~~chr21:35614293-35617009,
chr21:34744539-34746791~~chr21:35399305-35401597,
chr21:34744539-34746791~~chr21:35507739-35509404,
chr21:34744552-34746822~~chr21:35507858-35509465,
chr21:34744561-34746765~~chr21:34887508-34892091,
chr21:34744561-34746765~~chr21:35399885-35401612,
chr21:34744561-34746765~~chr21:35615361-35617172,
chr21:34744567-34746780~~chr21:35188780-35191250,
chr21:34744567-34746780~~chr21:35399613-35401825,
chr21:34744567-34746780~~chr21:35615336-35617206,
chr21:34744574-34746750~~chr21:35507769-35509498,
chr21:34744580-34747072~~chr21:35399810-35401595,
chr21:34744581-34746732~~chr21:35399641-35401580,
chr21:34744589-34746918~~chr21:35399325-35401608,
chr21:34744589-34746918~~chr21:35507735-35509518,
chr21:34744589-34746918~~chr21:35615292-35617215,
chr21:34744610-34746779~~chr21:35507406-35509556,
chr21:34744610-34746779~~chr21:35602844-35604275,
chr21:34744631-34746764~~chr21:35399233-35401565,
chr21:34744640-34746731~~chr21:35399927-35401584,
chr21:34744749-34746554~~chr21:35399692-35401398,
chr21:34744771-34746620~~chr21:35399417-35401599,
chr21:34744771-34746620~~chr21:35615456-35617044,
chr21:34744773-34746587~~chr21:35399649-35401523,
chr21:34744777-34746623~~chr21:35507640-35509736,
chr21:34744780-34746750~~chr21:35399619-35401488,
chr21:34744787-34746612~~chr21:35507728-35509232,
chr21:34744787-34746612~~chr21:35615562-35617011,
chr21:34744790-34746552~~chr21:35399665-35401305,
chr21:34744790-34746552~~chr21:35507844-35509236,
chr21:34744815-34746785~~chr21:35398829-35401607,
chr21:34744820-34746780~~chr21:35507828-35509473,
chr21:34744836-34747063~~chr21:35398212-35401570,
chr21:34744840-34746785~~chr21:35399637-35401641,
chr21:34744840-34746785~~chr21:35507813-35509465,
chr21:34744840-34746785~~chr21:35615343-35617201,
chr21:34744848-34746795~~chr21:35399380-35401604,
chr21:34744855-34746749~~chr21:34887552-34891083,
chr21:34744866-34746754~~chr21:34887518-34891075,
chr21:34744866-34746754~~chr21:35507843-35509232,
chr21:34744879-34746754~~chr21:34888325-34891071,
chr21:34744884-34746937~~chr21:35399872-35401634,
chr21:34744884-34746937~~chr21:35615517-35617148,
chr21:34744887-34746720~~chr21:35399838-35401610,
chr21:34744917-34746726~~chr21:35399887-35401622,
chr21:34744927-34746749~~chr21:35507798-35509438,
chr21:34745037-34746426~~chr21:35399955-35401288,
chr21:34750000-34775000~~chr21:34850000-34875000,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34750000-34775000~~chr21:35000000-35025000,
chr21:34750000-34775000~~chr21:35400000-35425000,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34750000-34775000~~chr21:35600000-35625000,
chr21:34750000-34775000~~chr21:35775000-35800000,
chr21:34750000-34775000~~chr21:35825000-35850000,
chr21:34750000-34775000~~chr21:35925000-35950000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36025000-36050000,