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Basic information

CohesinDB ID: CDBP00417840

Locus: chr21-34752619-34752901

Data sourse: GSE67783

Cell type: HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 61%, "14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, SOX13, ZFX, ZBTB48, WT1, CBX8, ZNF596, PRDM10, ERG, RELA, ATF3, SP140, ARNT, PRDM9, GABPA, TAL1, IKZF1, CEBPG, MED26, L3MBTL2, CTCF, RBM22, SOX5, PAX8, ZNF644, HSF1, SCRT1, CLOCK, ZNF24, STAG1

Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1,SETD4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00417840