- Basic information
- CohesinDB ID: CDBP00417841
- Locus: chr21-34753274-34753506
-
Data sourse: GSE98367, GSE138405, GSE206145, GSE120943, GSE126990
-
Cell type: RPE, Hela-Kyoto, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,SA1,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 59%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, SOX13, ZFX, ZBTB48, WT1, CBX8, ZNF596, PRDM10, ERG, RELA, ATF3, SP140, ARNT, PRDM9, GABPA, TAL1, IKZF1, CEBPG, MED26, L3MBTL2, CTCF, RBM22, SOX5, PAX8, ZNF644, HSF1, SCRT1, CLOCK, ZNF24, STAG1
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:34350000-34375000~~chr21:34725000-34750000,
chr21:34350000-34375000~~chr21:34750000-34775000,
chr21:34725000-34750000~~chr21:34825000-34850000,
chr21:34725000-34750000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34725000-34750000~~chr21:35025000-35050000,
chr21:34725000-34750000~~chr21:35200000-35225000,
chr21:34725000-34750000~~chr21:35400000-35425000,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34725000-34750000~~chr21:35600000-35625000,
chr21:34725000-34750000~~chr21:35825000-35850000,
chr21:34725000-34750000~~chr21:35925000-35950000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34750000-34775000~~chr21:34850000-34875000,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34750000-34775000~~chr21:35000000-35025000,
chr21:34750000-34775000~~chr21:35400000-35425000,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34750000-34775000~~chr21:35600000-35625000,
chr21:34750000-34775000~~chr21:35775000-35800000,
chr21:34750000-34775000~~chr21:35825000-35850000,
chr21:34750000-34775000~~chr21:35925000-35950000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36025000-36050000,