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Basic information

CohesinDB ID: CDBP00417842

Locus: chr21-34754481-34755013

Data sourse: GSE67783, ENCSR153HNT, ENCSR000BKV

Cell type: K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 57%, "14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFATC3, SMC1A, ZNF316, HDAC1, MYCN, CREM, LCORL, TOP2A, ZFX, CTBP1, ZSCAN16, XBP1, WT1, ZBTB48, MTA2, SOX2, NONO, ERG3, CBX8, NBN, CDK9, HOXB13, ZNF28, ERG, YY1, RELA, EHMT2, MYC, SMARCA4, ZNF671, ARID1B, ZNF24, PRDM1, ZFP36, GRHL3, ZBTB5, THAP1, ETV6, HMBOX1, MGA, TAL1, CBFA2T3, MAX, ZEB2, GATA1, IKZF1, RCOR1, MTA1, SMARCE1, MED1, CBX2, VDR, GMEB1, JMJD1C, GFI1B, ELF1, THRAP3, CREB1, ZNF512, CHD8, OCA2, KLF9, L3MBTL2, CTCF, RBM22, SPI1, AR, DPF2, HDAC2, E2F6, TRIM24, ZNF366, FLI1, RNF2, NCOR1, MAZ, ATF1, STAG1, AHR

Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A,SETD4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159216, ENSG00000185917,

eachgene

Deatailed information for cohesin site CDBP00417842