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Basic information

CohesinDB ID: CDBP00417848

Locus: chr21-34766828-34767249

Data sourse: ENCSR000EDE, GSE50893, ENCSR000BLY

Cell type: GM12892, GM2630, SNYDER, GM12878, GM12891, HeLa-S3, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.922

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 82%, "14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, FOXA2, ZFX, MEIS2, SMAD3, PCBP2, FOXA1, PBX2, HOXC5, KDM1A, RELA, RARA, ZNF384, ATF3, DAXX, GRHL3, NKX2-1, GABPA, FOS, RCOR1, NR2F6, NR2F2, TCF7L2, NR2F1, ESR1, OCA2, JUN, CTCF, RBM22, SPI1, FOSL2, ZBTB26, JUND, EED

Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A,SETD4,RCAN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159200, ENSG00000159216, ENSG00000185917,

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Deatailed information for cohesin site CDBP00417848