- Basic information
- CohesinDB ID: CDBP00417854
- Locus: chr21-34775844-34776126
-
Data sourse: GSE116868, GSE68388
-
Cell type: MB157, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, HMG20A, ZNF660, SOX2, MEIS2, NME2, PATZ1, FOXA1, HLF, SUZ12, RBFOX2, PBX2, RXRB, MLL4, TFAP4, ATF3, BMI1, THRB, CHD7, PRDM1, ATF4, ZNF273, MXD4, SMARCE1, ZSCAN4, HDAC3, ZNF736, JMJD1C, TEAD1, TRIM28, KLF6, ZNF26, NFE2L2, RCOR2, ESR1, HNF1B, TP73, ZNF217, JUN, TCF12, CTCF, EP300, BAF155, ZBTB20, ZNF157, GATA6, SOX5, DPF2, SOX9, TRIM24, RFX5, SOX6, ZNF674, E2F1, ZNF528, SMC1, TEAD4, FOXA3, ZNF175, GATAD2A, GTF2F1, TFAP2C, RBPJ, BRD3, POU5F1, ID3, CTBP1, ZSCAN21, ZBTB17, ZBTB48, ZNF317, DUX4, NONO, GATAD1, SAP130, NBN, ARID3A, DDX5, BAHD1, TBP, HNF4G, HOXC5, ZBTB21, ERG, SMARCC2, ETS1, MYC, SMARCA4, RFX1, ARID1B, RAD21, HOMEZ, PROX1, NKX2-1, RXRA, APC, STAT3, ZNF614, XRCC5, NKX3-1, RCOR1, LEF1, NFE2, NR2F6, MIER3, NFRKB, NR3C1, ESRRA, CEBPB, ZNF750, CREB1, CCAR2, TBL1XR1, EZH2, GRHL2, ZNF652, TRPS1, GABPB1, ZHX2, HES1, MIXL1, TFE3, IRF1, HDAC2, GATA2, ZNF644, DRAP1, NR2C2, ZGPAT, EP400, NFIL3, ATF1, ETV5, RUNX1, THAP11, ZNF585A, BCL6, ZBTB24, HDAC1, CEBPA, SOX13, AFF4, ZNF335, SIN3A, SMAD3, CBX8, SMARCC1, PRDM10, RARA, ZNF384, BRD9, RUNX2, GATA4, ZNF184, PBX4, DAXX, BACH1, ARNT, ATF2, HMBOX1, ZNF518A, ZEB2, FOXM1, CBFA2T3, NR2C1, SMAD4, CDK8, FOS, PBX3, SMARCB1, MED1, ZNF584, HMGXB4, TEAD3, PML, CEBPD, PIAS1, SMAD1, ZNF3, NR1H2, C11orf30, L3MBTL2, KLF16, RBM22, USF1, SP1, TFAP2A, BCL11A, HNF4A, IKZF5, ARID2, ARID1A, ZBTB7A, ATF7, ZHX1, ASH2L, POU2F3, ZNF548, CTBP2, PHIP, FOXP1, SMC3, ELL2, ZFP82, TRP47, CBFA2T2, PPARG, FOXA2, MTA3, CREM, CHD2, SS18, MIER2, ZNF692, GTF2B, FOXF1, MEF2C, TCF7, ZBTB33, CDK9, ZNF580, ZKSCAN1, ZNF318, KDM1A, ZNF589, RELA, HOXB13, JUNB, NEUROD1, ZNF830, ZFP36, HIF1A, GATA3, MGA, TAL1, MAX, NRIP1, GATA1, ZNF143, CBX2, TLE3, KLF4, CEBPG, SP7, GFI1B, NR2F2, ZKSCAN8, ZNF83, ZNF512, TCF7L2, NR2F1, ZNF791, TP53, PKNOX1, ZNF334, NFKB1, ZSCAN22, ELF3, BRD2, KAT8, BHLHE40, AR, PTRF, NFKBIZ, ARID4B, ZBTB40, YAP1, ZNF324, EGLN2, RNF2, NCOR1, BRD4, JUND, CUX1, ZNF440, IRF9, MEF2D, BRCA1, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): CLIC6,SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
- Related loop:
chr21:34350000-34375000~~chr21:34750000-34775000,
chr21:34350000-34375000~~chr21:34775000-34800000,
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34750000-34775000~~chr21:34850000-34875000,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34750000-34775000~~chr21:35000000-35025000,
chr21:34750000-34775000~~chr21:35400000-35425000,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34750000-34775000~~chr21:35600000-35625000,
chr21:34750000-34775000~~chr21:35775000-35800000,
chr21:34750000-34775000~~chr21:35825000-35850000,
chr21:34750000-34775000~~chr21:35925000-35950000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36025000-36050000,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34975000-35000000,
chr21:34775000-34800000~~chr21:35000000-35025000,
chr21:34775000-34800000~~chr21:35025000-35050000,
chr21:34775000-34800000~~chr21:35350000-35375000,
chr21:34775000-34800000~~chr21:35400000-35425000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35725000-35750000,
chr21:34775000-34800000~~chr21:35825000-35850000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35925000-35950000,