- Basic information
- CohesinDB ID: CDBP00417857
- Locus: chr21-34782961-34783349
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Data sourse: ENCSR000BLD, GSE67783, ENCSR000BKV, GSE86191, ENCSR000BLY, GSE206145-NatGen2015, ENCSR153HNT, GSE83726, GSE25021, GSE165895
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Cell type: MCF-7, H1-hESC, Fibroblast, HCT-116, RH4, SK-N-SH, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, BCL6, POU2F2, PGR, EZH2phosphoT487, POU5F1, FOXA2, SS18, ZFX, MAFF, SMAD3, WT1, ZNF205, ERG3, ERG2, ZFHX2, PRDM10, YY1, RELA, RUNX2, MYC, SMARCA4, ZNF184, RAD21, ARNT, HIF1A, HMBOX1, MAX, ZNF143, IKZF1, SUPT5H, MED1, ZNF750, NR3C1, TFAP2C, ESR1, TP53, C11orf30, EGR2, CTCF, JUN, MAFK, KLF1, AR, KLF17, ARID2, ARID1A, FLI1, BRD4, PHIP, MAZ, ZIM3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): RUNX1,CLIC6,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159212,
ENSG00000159216,
- Related loop:
chr21:34350000-34375000~~chr21:34775000-34800000,
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34975000-35000000,
chr21:34775000-34800000~~chr21:35000000-35025000,
chr21:34775000-34800000~~chr21:35025000-35050000,
chr21:34775000-34800000~~chr21:35350000-35375000,
chr21:34775000-34800000~~chr21:35400000-35425000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35725000-35750000,
chr21:34775000-34800000~~chr21:35825000-35850000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35925000-35950000,