- Basic information
- CohesinDB ID: CDBP00417869
- Locus: chr21-34800864-34803584
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE120943, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, GM19238, HeLa, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 64% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.300
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 38%,
"15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAFG, CEBPA, GTF2B, STAT1, FOXA1, MLLT3, MEF2C, CDK9, LEO1, HOXB13, RELA, ZNF384, RUNX3, SUPT5H, CDK8, CEBPB, TRIM28, C11orf30, RBM22, MAFK, SPI1, IRF1, BRD4, PHIP, ZNF316, EED
- Target gene symbol (double-evidenced CRMs): SMIM11A,SETD4,CLIC6,RCAN1,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:33950000-33975000~~chr21:34800000-34825000,
chr21:34350000-34375000~~chr21:34775000-34800000,
chr21:34350000-34375000~~chr21:34800000-34825000,
chr21:34525000-34550000~~chr21:34800000-34825000,
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34675000-34700000~~chr21:34800000-34825000,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34975000-35000000,
chr21:34775000-34800000~~chr21:35000000-35025000,
chr21:34775000-34800000~~chr21:35025000-35050000,
chr21:34775000-34800000~~chr21:35350000-35375000,
chr21:34775000-34800000~~chr21:35400000-35425000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35725000-35750000,
chr21:34775000-34800000~~chr21:35825000-35850000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35925000-35950000,
chr21:34800000-34825000~~chr21:36025000-36050000,
chr21:34800491-34802782~~chr21:35399613-35401825,
chr21:34800561-34802971~~chr21:35399637-35401641,
chr21:34800561-34802971~~chr21:35507813-35509465,
chr21:34800597-34802977~~chr21:35399305-35401597,
chr21:34800634-34802701~~chr21:35431208-35432504,
chr21:34800640-34802930~~chr21:35399950-35401561,
chr21:34800647-34802985~~chr21:35399325-35401608,
chr21:34800665-34802895~~chr21:34887508-34892091,
chr21:34800839-34803321~~chr21:34887491-34891013,
chr21:34800839-34803321~~chr21:35399577-35401546,
chr21:34800869-34802601~~chr21:35399692-35401398,
chr21:34800995-34802442~~chr21:35507809-35509924,
chr21:34801023-34802438~~chr21:34887518-34891075,
chr21:34806786-34808998~~chr21:34845221-34847609,