- Basic information
- CohesinDB ID: CDBP00417871
- Locus: chr21-34806718-34810175
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Data sourse: GSE104888, GSE72082, ENCSR000BSB, ENCSR501LQA, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE131606, ENCSR330ELC, GSE108869, ENCSR000BUC, GSE165895, ENCSR000EFJ, GSE93080, ENCSR000DZP, GSE67783, GSE86191, GSE138405, GSE76893, GSE101921, ENCSR806UKK, GSE135093, GSE120943, GSE206145-NatGen2015, GSE138105, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, GSE98367, ENCSR193NSH, ENCSR768DOX, ENCSR000EHW, GSE85526, ENCSR981FDC, ENCSR247LSH, ENCSR000BMY, ENCSR620NWG, ENCSR748MVX, ENCSR767DFK, ENCSR807WAC, GSE206145, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE110061, GSE129526, ENCSR000HPG, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR537EFT, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, GSE126755, ENCSR000ECS
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Cell type: GM2610, SLK, OCI-AML-3, HuCC-T1, RPE, GM2630, HMEC, Fibroblast, HEKn, HeLa-S3, GM2255, IMR-90, K-562, GM18486, HFFc6, DKO, Monocytes, GM12878, GM2588, SK-N-SH, RT-112, Macrophage, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, HCAEC, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 32% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.667
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 24%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, ZNF675, FOXA1, RXRB, MLL4, KDM3A, ZBTB44, IKZF3, PAX5, TEAD1, LMO2, MED26, PITX3, ZNF561, ZNF577, ARID5B, SOX5, DEK, RFX3, KLF3, GATAD2A, BRD3, POU5F1, ZNF263, TOP2A, CTBP1, ERF, DUX4, STAT1, SAP130, ERG, ZBTB21, ZNF597, NFKB2, SMARCA4, RFX1, UBN1, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, ZNF257, GATA2, ZNF644, MXD3, SIX2, FLI1, DRAP1, MXI1, RELB, RUNX1, CEBPA, TET2, TBX3, SP5, SMARCC1, PRDM10, ATF2, FOXM1, SMARCB1, TERF1, ZNF331, PIAS1, NR1H2, C11orf30, EVI1, ARID2, IKZF5, OVOL3, RBM25, ELL2, ETV4, NFATC3, MEF2B, CBX3, ZNF207, CREM, CHD2, SS18, PAF1, NFATC1, WT1, MEF2C, JUNB, NEUROD1, TCF4, ZFP36, BATF, KLF4, ZFP69B, MED, EGR2, ELF3, ARID4B, RXR, ZNF366, ZBTB26, HSF1, NCOR1, SCRT1, ZNF316, RUNX1-3, FOSL1, ZNF660, XBP1, HNF1A, ZNF101, SRSF4, PBX2, TSC22D4, ATF3, THRB, ZFP64, RUNX3, CBFB, TP63, MITF, BACH2, ZNF467, MAF, JMJD1C, MYOG, ELF1, SNAI2, KLF10, JUN, CTCF, TAF3, LMO1, MNT, DPF2, IRF4, TFAP2C, RBPJ, MLX, ZNF239, ZSCAN21, MTA2, ZBTB48, ZBTB17, ZNF317, SRF, NBN, CHD4, PBX1, TSHZ1, HOMEZ, FOXP2, RXRA, NKX3-1, PRDM14, MIER3, TERF2, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, CCAR2, TBL1XR1, KLF8, GRHL2, EBF3, SSRP1, NFIL3, THAP11, EZH2phosphoT487, LDB1, AFF4, SOX13, ZNF770, ARNT, DAXX, ZNF48, PRDM9, ZEB2, ETV6, PBX3, ZNF10, HMGXB4, TEAD3, ZXDB, ZNF680, U2AF1, KLF9, USF1, SP1, BCL11A, TFAP2A, ATF7, ASH2L, CTBP2, PRDM6, SMC3, MLLT1, STAG2, STAG1, ZNF394, AGO1, MTA3, EBF1, MEIS1, MAFF, ZNF580, BCL3, ZKSCAN1, KDM1A, ISL1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, AGO2, ZNF768, TP53, ZNF334, NFKB1, PHOX2B, BRD2, PHF5A, KAT8, TBX21, EGR1, RNF2, IKZF2, BRD4, JUND, CUX1, ZSCAN23, TBX2, PGR, SOX2, PATZ1, LEO1, TFAP4, SIN3B, CHD7, MXD4, ZNF189, KLF6, NFE2L2, ZNF217, ESR1, TP73, KLF1, SOX4, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, KDM4C, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, SMARCC2, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, SRSF3, EZH2, ZNF652, SPI1, HDAC2, INTS13, ZNF490, ETV5, BCL6, SIN3A, ERG3, MEF2A, CREBBP, RARA, ZNF35, ZNF384, NFYC, HMGB2, ZNF518A, SMAD4, CDK8, ZEB1, SPDEF, ZMYM3, SUPT16H, NCOA1, SREBF2, RBM22, MAFK, HNF4A, NR4A1, REST, ARID1A, ZHX1, HNRNPLL, FOXP1, AATF, NCOR2, PPARG, ZNF692, ZNF30, ZNF574, TCF7, RELA, TARDBP, SKIL, MAX, ZNF592, GFI1B, TCF7L2, NR2F1, KDM5B, NEUROG2, PKNOX1, MYOD1, AR, PAX3-FOXO1, ZBTB16, YAP1, AHR, FOSL2, DMAP1, HMG20A, ZSCAN5C, E2F7, RBFOX2, ZNF28, SFMBT1, ZFHX2, LYL1, INSM2, NFIC, ZNF362, CTCFL, PRDM1, MECOM, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, HNF1B, USF2, TCF12, EP300, BAF155, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, RUNX1T1, CDK7, MLLT3, GATAD1, ARID3A, ZNF300, ZNF585B, ASCL1, ZNF341, RAD21, GRHL3, PROX1, APC, ZNF614, XRCC5, ZNF639, ARNTL, ZNF750, FEZF1, TFE3, EHF, HBP1, IRF1, ZGPAT, ZNF766, MRTFB, PTBP1, SMC1A, MAFG, SIRT6, FIP1L1, ZFX, SMAD3, PCBP2, PRPF4, NOTCH1, RUNX2, CDK6, GATA4, OSR2, GR, ZNF184, NRF1, PBX4, SUPT5H, FOS, CHD1, TGIF2, MED1, ZNF558, MYB, CEBPD, SCRT2, ZNF3, SETDB1, NIPBL, ZBTB7A, GLI2, POU2F3, PHIP, TCF3, SKI, ZNF283, FOXA2, RBBP5, ZNF600, MIER2, ZBED1, ZBTB33, CDK9, HOXB13, YY1, BRCA1, SP140, HIF1A, GATA1, HAND2, CEBPG, SP7, NCOA3, NR2F2, ZNF687, ZNF213, ZNF843, BHLHE40, NFKBIZ, TAF1, ZBTB42, NOTCH3, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): RCAN1,RUNX1,SETD4,CLIC6,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 88
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:33950000-33975000~~chr21:34800000-34825000,
chr21:34350000-34375000~~chr21:34800000-34825000,
chr21:34525000-34550000~~chr21:34800000-34825000,
chr21:34675000-34700000~~chr21:34800000-34825000,
chr21:34800000-34825000~~chr21:36025000-36050000,
chr21:34800491-34802782~~chr21:35399613-35401825,
chr21:34800561-34802971~~chr21:35399637-35401641,
chr21:34800561-34802971~~chr21:35507813-35509465,
chr21:34800597-34802977~~chr21:35399305-35401597,
chr21:34800634-34802701~~chr21:35431208-35432504,
chr21:34800640-34802930~~chr21:35399950-35401561,
chr21:34800647-34802985~~chr21:35399325-35401608,
chr21:34800665-34802895~~chr21:34887508-34892091,
chr21:34800839-34803321~~chr21:34887491-34891013,
chr21:34800839-34803321~~chr21:35399577-35401546,
chr21:34800869-34802601~~chr21:35399692-35401398,
chr21:34800995-34802442~~chr21:35507809-35509924,
chr21:34801023-34802438~~chr21:34887518-34891075,
chr21:34806786-34808998~~chr21:34845221-34847609,