- Basic information
- CohesinDB ID: CDBP00417883
- Locus: chr21-34870048-34873238
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Data sourse: GSE67783, GSE86191, GSE111913, ENCSR000HPG, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE83726, GSE103477, GSE116344, GSE131606
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Cell type: MDM, RPE, Fibroblast, HCT-116, RH4, RT-112, IMR-90, K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 37%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, PGR, SOX2, NME2, XBP1, FOXA1, RBFOX2, PBX2, LEO1, HDGF, MEN1, THRB, ZC3H8, RUNX3, PRDM1, ZNF429, ATF4, ZNF189, PAX5, TP63, ZSCAN4, ZNF736, JMJD1C, MAF, TEAD1, ELF1, ZNF121, KLF6, BCLAF1, NFE2L2, LMO2, ESR1, SMAD5, USF2, CTCF, BAF155, DPF2, SIX5, IRF4, TRIM24, RAD51, KMT2B, PDX1, TFAP2C, EED, RBPJ, POU2F2, BRD1, MYCN, POU5F1, RUNX1T1, ID3, TOP2A, MTA2, ZBTB48, ZSCAN5A, STAT1, ERG2, ARID3A, ZNF300, HOXC5, ERG, PBX1, ASCL1, OGG1, MYC, SMARCA4, RAD21, GRHL3, NKX2-1, STAT3, XRCC5, PRDM14, RCOR1, TERF2, CD74, VDR, ARNTL, NR3C1, ESRRA, CEBPB, KMT2A, EZH2, GRHL2, SPI1, ZNF257, GATA2, SIX2, FLI1, ZIM3, CEBPA, SIRT6, ZFX, ZNF534, SMAD3, ZNF770, ERG3, ZNF549, ZNF384, GATA4, DAXX, PBX4, ZNF48, PRDM9, SMAD4, ETV6, PBX3, SUPT5H, CHD1, SNRNP70, CDK8, FOS, MED1, TERF1, PML, MYB, SCRT2, RBM22, TFAP2A, ARID2, REST, POU2F3, ATF7, ASH2L, HNRNPLL, HOXA9, PHIP, TCF3, FOXP1, BCOR, SMC3, STAG1, MLLT1, SKI, PPARG, TBL1X, FOXA2, EBF1, MEIS1, SS18, CREM, GTF2B, WT1, ESR2, FOXF1, ZBTB33, ZNF823, CDK9, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, TARDBP, JUNB, SP140, TCF4, HIF1A, BHLHE22, GATA3, BATF, TAL1, MAX, GATA1, AGO2, ZNF143, PLAG1, ZFP69B, NR2F2, NR2F1, TCF7L2, TP53, PKNOX1, MED, ZNF334, NFKB1, MYOD1, ELF3, AR, TAF1, ZBTB40, HSF1, IKZF2, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): RUNX1,CLIC6,SETD4,SMIM11A,RCAN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 60
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
- Related loop:
chr21:33900000-33925000~~chr21:34875000-34900000,
chr21:34350000-34375000~~chr21:34850000-34875000,
chr21:34350000-34375000~~chr21:34875000-34900000,
chr21:34500000-34525000~~chr21:34850000-34875000,
chr21:34500000-34525000~~chr21:34875000-34900000,
chr21:34550000-34575000~~chr21:34850000-34875000,
chr21:34600000-34625000~~chr21:34875000-34900000,
chr21:34675000-34700000~~chr21:34850000-34875000,
chr21:34675000-34700000~~chr21:34875000-34900000,
chr21:34700000-34725000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34750000-34775000~~chr21:34850000-34875000,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34844239-34846733~~chr21:34874252-34875874,
chr21:34850000-34875000~~chr21:35150000-35175000,
chr21:34850000-34875000~~chr21:35375000-35400000,
chr21:34850000-34875000~~chr21:35500000-35525000,
chr21:34850000-34875000~~chr21:35825000-35850000,
chr21:34850000-34875000~~chr21:35925000-35950000,
chr21:34850000-34875000~~chr21:35975000-36000000,
chr21:34850000-34875000~~chr21:36025000-36050000,
chr21:34863344-34865208~~chr21:34881766-34882905,
chr21:34875000-34900000~~chr21:34975000-35000000,
chr21:34875000-34900000~~chr21:35000000-35025000,
chr21:34875000-34900000~~chr21:35025000-35050000,
chr21:34875000-34900000~~chr21:35125000-35150000,
chr21:34875000-34900000~~chr21:35150000-35175000,
chr21:34875000-34900000~~chr21:35175000-35200000,
chr21:34875000-34900000~~chr21:35200000-35225000,
chr21:34875000-34900000~~chr21:35225000-35250000,
chr21:34875000-34900000~~chr21:35250000-35275000,
chr21:34875000-34900000~~chr21:35300000-35325000,
chr21:34875000-34900000~~chr21:35350000-35375000,
chr21:34875000-34900000~~chr21:35375000-35400000,
chr21:34875000-34900000~~chr21:35400000-35425000,
chr21:34875000-34900000~~chr21:35500000-35525000,
chr21:34875000-34900000~~chr21:35575000-35600000,
chr21:34875000-34900000~~chr21:35600000-35625000,
chr21:34875000-34900000~~chr21:35625000-35650000,
chr21:34875000-34900000~~chr21:35825000-35850000,
chr21:34875000-34900000~~chr21:35925000-35950000,
chr21:34875000-34900000~~chr21:35975000-36000000,
chr21:34875000-34900000~~chr21:36025000-36050000,
chr21:34875000-34900000~~chr21:36100000-36125000,
chr21:34875000-34900000~~chr21:36675000-36700000,