- Basic information
- CohesinDB ID: CDBP00417886
- Locus: chr21-34894062-34895143
-
Data sourse: GSE98367, ENCSR879KXD, GSE206145, GSE206145-NatGen2015, GSE120943, GSE83726, GSE68388, GSE116344
-
Cell type: RPE, Fibroblast, RH4, Monocytes, HuCC-T1, K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: Mau2,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 34%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, ZNF675, NME2, FOXA1, RXRB, MLL4, KDM3A, HDGF, MEN1, THAP1, ZBTB44, IKZF3, MORC2, PAX5, ZNF320, TEAD1, ZNF121, LMO2, OCA2, MED26, HDAC8, ZNF561, ZNF577, E4F1, SOX5, PAX8, DEK, E2F4, ZNF674, NR5A2, RFX3, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, POU5F1, BRD3, TOP2A, ZNF263, CTBP1, ZMYND11, ERF, DUX4, STAT1, SAP130, ERG, ZBTB21, PAX6, ZNF597, ZBTB8A, NFKB2, EZH1, SMARCA4, RFX1, FOXK2, UBN1, ZNF398, RCOR1, CD74, NR2F6, NFRKB, CEBPB, HNRNPL, CREB1, EPAS1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, ZNF257, GATA2, ZNF644, MXD3, SIX2, FLI1, HCFC1, DRAP1, MXI1, ZNF785, RELB, EP400, RUNX1, CEBPA, NKX2-2, HDAC1, IRF3, REPIN1, SP5, TRIM22, SMARCC1, PRDM10, ZXDC, ZBTB2, CBX4, TFDP1, ZBTB10, ELK1, ATF2, SOX11, FOXM1, SP2, SMARCB1, GMEB1, PML, TERF1, PIAS1, SMAD1, NR1H2, C11orf30, MBD1, STAT5A, ARID2, IKZF5, RBM25, AFF1, MBD2, ELL2, HMGB1, ETV4, NFATC3, CBFA2T2, MEF2B, CBX3, ZNF207, CREM, CHD2, PAF1, SS18, NFATC1, ZSCAN16, WT1, MEF2C, CREB3L1, JUNB, NEUROD1, TCF4, ZFP36, BATF, MAF1, ZSCAN26, PLAG1, KLF4, BCL11B, ZFP69B, ZKSCAN8, IRF5, ZBTB6, MED, EGR2, ELF3, RBM14, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, NCOR1, HSF1, SCRT1, ILF3, ZNF316, FOSL1, ZNF660, XBP1, ZNF101, KDM4B, PBX2, SRSF4, ZNF596, HNRNPK, ATF3, THRB, ZFP64, HNRNPUL1, RUNX3, WDHD1, CBFB, ZNF273, TP63, ZSCAN4, MITF, BACH2, ZNF467, JMJD1C, MAF, INTS11, ELF1, RBM39, SNAI2, KLF10, SMAD5, FUS, CTCF, JUN, TAF3, L3MBTL4, ZBTB20, MNT, LMO1, DPF2, RYBP, SIX5, IRF4, ZNF423, ZNF677, PDX1, TFAP2C, RBPJ, MLX, ZNF239, ZNF317, ZBTB17, ZBTB48, ZSCAN21, MTA2, NONO, SRF, DDX5, NBN, CHD4, PBX1, ONECUT1, KDM4A, HOMEZ, ZNF2, FOXP2, TSHZ1, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, LEF1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, ZBTB11, FOXK1, TBL1XR1, KLF8, GRHL2, EBF3, KDM5A, ZBTB14, ZNF146, ZSCAN29, SMARCA5, NFIL3, CC2D1A, THAP11, CTNNB1, EZH2phosphoT487, SOX13, AFF4, ZNF770, ZNF513, ZMIZ1, ZNF792, ZNF18, SP3, NFIB, ARNT, DAXX, BACH1, ZNF48, PRDM9, HMBOX1, ZEB2, NFYA, PBX3, ETV6, ZNF10, NCAPH2, HMGXB4, MAFB, TEAD3, DIDO1, ZXDB, ZNF680, U2AF1, TAF7, KLF9, USF1, SP1, BCL11A, TFAP2A, ZNF479, ATF7, ASH2L, CTBP2, PCGF2, GLIS2, PRDM6, ZNF623, SMC3, STAT2, MLLT1, STAG1, STAG2, ZNF394, TRP47, SAFB, AGO1, MTA3, EBF1, MAFF, ESR2, ZNF580, BCL3, KLF7, KDM1A, ZKSCAN1, BRG1, ZIC2, PCGF1, GATA3, TAL1, NRIP1, ZNF143, MTA1, AGO2, CBX2, ZNF141, ZNF768, TP53, ZNF334, NFKB1, ZSCAN22, BRD2, PHF5A, KAT8, ARRB1, TBX21, ZNF430, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, CUX1, ZSCAN23, IRF9, ZNF468, PGR, FANCL, CBX5, SOX2, PATZ1, LEO1, RING1B, UBTF, SMAD1-5, TFAP4, SIN3B, BMI1, CHD7, ZNF444, ATF4, MXD4, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, ZNF217, ESR1, SAP30, ZNF524, KLF1, ZNF695, SOX9, SOX4, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, KDM4C, ZBTB1, ZSCAN5A, ELK4, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, SMARCC2, ETS1, MYC, ARID1B, PHF21A, KLF12, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, GFI1, INO80, ZNF343, DNMT3B, SRSF3, EZH2, ZNF652, PHF8, SPI1, ZNF202, PCBP1, HDAC2, INTS13, GATAD2B, ZNF777, NCOA2, ZNF76, ZNF554, NFYB, ETV5, BCL6, SIN3A, ZBTB12, ZFP37, ERG3, NFXL1, MEF2A, RARA, CREBBP, ZNF384, NFYC, TAF15, ZNF35, ZNF133, ZNF169, SMAD4, ZNF518A, CBFA2T3, CDK8, CSNK2A1, ZEB1, SPDEF, ZMYM3, SUPT16H, NCOA1, GTF3C2, SREBF2, ZNF22, RBM22, MAFK, HNF4A, NR4A1, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, CXXC4, PPARG, TBL1X, HDAC6, ZNF692, GTF2B, ZNF30, ZNF662, TCF7, ZNF318, FOXO3, RELA, TARDBP, CHAMP1, ZNF282, SKIL, MGA, MAX, ZNF223, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, NEUROG2, ZNF791, PKNOX1, MYOD1, T, AR, KMT2D, ZBTB16, YAP1, ZNF324, HEXIM1, ZNF280D, ZZZ3, AHR, FOSL2, DMAP1, ZNF391, HMG20A, E2F7, ZSCAN5C, HMGN3, MEIS2, SUZ12, RBFOX2, ZNF28, ZFHX2, SFMBT1, LYL1, INSM2, NFIC, ZNF362, CTCFL, ZBTB5, PRDM1, KLF14, MECOM, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, HNF1B, USF2, TCF12, BAF155, EP300, GATA6, PRDM4, GLI4, SOX6, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, CDK7, RUNX1T1, ID3, HINFP, MLLT3, GATAD1, GMEB2, ARID3A, ASCL1, MIER1, ZNF341, RAD21, GRHL3, PROX1, APC, XRCC5, ZNF614, NFE2, ZNF639, ARNTL, ZNF750, ZNF501, ZNF85, JMJD6, FEZF1, TRPS1, HES1, TFE3, EHF, HBP1, IRF1, SREBF1, ZGPAT, MRTFB, ZIM3, ZC3H11A, MYF5, ATF1, PTBP1, CBX1, SMC1A, SIRT6, ZNF335, ZFX, FIP1L1, ZNF534, SMAD3, CBX8, TWIST1, IRF2, PRPF4, NOTCH1, NCOA6, BRD9, RUNX2, SMAD2, GATA4, OSR2, ZNF184, ZSCAN30, CDK6, PBX4, NRF1, SUPT5H, CHD1, FOS, TGIF2, MED1, CEBPD, MYB, SCRT2, KDM6B, ZNF558, VEZF1, ZNF3, L3MBTL2, SETDB1, HIF2A, KLF16, NIPBL, PHF20, ZBTB7A, CCNT2, POU2F3, PHIP, TCF3, ZNF783, SKI, NELFA, ZNF283, KLF13, FOXA2, RBBP5, E2F8, ZNF600, MIER2, ZBED1, ZBTB33, CDK9, HOXB13, YY1, ZNF148, ASXL1, ZNF610, SP140, BRCA1, HIF1A, BHLHE22, OTX2, ZNF519, ZNF449, GATA1, TLE3, CEBPG, SP7, NCOA3, NR2F2, ZNF512, ZNF687, ZNF837, ZNF213, ZNF843, ZFP28, BHLHE40, NFKBIZ, TAF1, ZBTB40, ZBTB42, MYNN, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): ATP5PO,AP000311.1,RCAN1,SETD4,RUNX1,SIM2,SMIM11A,ITSN1,CLIC6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000249209,
ENSG00000205726,
ENSG00000241837,
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
ENSG00000159263,
- Related loop:
chr21:33900000-33925000~~chr21:34875000-34900000,
chr21:34350000-34375000~~chr21:34875000-34900000,
chr21:34500000-34525000~~chr21:34875000-34900000,
chr21:34600000-34625000~~chr21:34875000-34900000,
chr21:34675000-34700000~~chr21:34875000-34900000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34744530-34746777~~chr21:34887476-34892097,
chr21:34744561-34746765~~chr21:34887508-34892091,
chr21:34744855-34746749~~chr21:34887552-34891083,
chr21:34744866-34746754~~chr21:34887518-34891075,
chr21:34744879-34746754~~chr21:34888325-34891071,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34800665-34802895~~chr21:34887508-34892091,
chr21:34800839-34803321~~chr21:34887491-34891013,
chr21:34801023-34802438~~chr21:34887518-34891075,
chr21:34875000-34900000~~chr21:34975000-35000000,
chr21:34875000-34900000~~chr21:35000000-35025000,
chr21:34875000-34900000~~chr21:35025000-35050000,
chr21:34875000-34900000~~chr21:35125000-35150000,
chr21:34875000-34900000~~chr21:35150000-35175000,
chr21:34875000-34900000~~chr21:35175000-35200000,
chr21:34875000-34900000~~chr21:35200000-35225000,
chr21:34875000-34900000~~chr21:35225000-35250000,
chr21:34875000-34900000~~chr21:35250000-35275000,
chr21:34875000-34900000~~chr21:35300000-35325000,
chr21:34875000-34900000~~chr21:35350000-35375000,
chr21:34875000-34900000~~chr21:35375000-35400000,
chr21:34875000-34900000~~chr21:35400000-35425000,
chr21:34875000-34900000~~chr21:35500000-35525000,
chr21:34875000-34900000~~chr21:35575000-35600000,
chr21:34875000-34900000~~chr21:35600000-35625000,
chr21:34875000-34900000~~chr21:35625000-35650000,
chr21:34875000-34900000~~chr21:35825000-35850000,
chr21:34875000-34900000~~chr21:35925000-35950000,
chr21:34875000-34900000~~chr21:35975000-36000000,
chr21:34875000-34900000~~chr21:36025000-36050000,
chr21:34875000-34900000~~chr21:36100000-36125000,
chr21:34875000-34900000~~chr21:36675000-36700000,
chr21:34887476-34892097~~chr21:35399848-35401817,
chr21:34887476-34892097~~chr21:35614293-35617009,
chr21:34887476-34892097~~chr21:35838896-35841159,
chr21:34887491-34891013~~chr21:35399577-35401546,
chr21:34887508-34892091~~chr21:35203103-35206366,
chr21:34887508-34892091~~chr21:35255866-35258344,
chr21:34887508-34892091~~chr21:35399885-35401612,
chr21:34887508-34892091~~chr21:35615361-35617172,
chr21:34887508-34892091~~chr21:35642873-35644084,
chr21:34887508-34892091~~chr21:35839117-35841138,
chr21:34887510-34891018~~chr21:35047687-35050087,
chr21:34887510-34891018~~chr21:35399417-35401599,
chr21:34887510-34891018~~chr21:35615456-35617044,
chr21:34887518-34891075~~chr21:35399881-35401571,
chr21:34887518-34891075~~chr21:35839484-35840994,
chr21:34887552-34891083~~chr21:35205570-35207542,
chr21:34887552-34891083~~chr21:35399904-35401567,
chr21:34887552-34891083~~chr21:35507875-35509392,
chr21:34887552-34891083~~chr21:35839536-35841080,
chr21:34887571-34890954~~chr21:35399686-35401482,
chr21:34888052-34891094~~chr21:35399888-35401573,
chr21:34888113-34891105~~chr21:35399887-35401439,
chr21:34888113-34891105~~chr21:35507813-35509282,
chr21:34888151-34890935~~chr21:35399911-35401339,
chr21:34888151-34890935~~chr21:35507640-35509736,
chr21:34888177-34892032~~chr21:35399380-35401604,
chr21:34888177-34892032~~chr21:35507839-35509185,
chr21:34888177-34892032~~chr21:35615399-35616943,
chr21:34888177-34892032~~chr21:35838708-35841092,
chr21:34888325-34891071~~chr21:35399859-35401454,
chr21:34888362-34892029~~chr21:35399641-35401580,
chr21:34888362-34892029~~chr21:35507701-35509916,
chr21:34888362-34892029~~chr21:35838891-35841138,
chr21:34888802-34891093~~chr21:35399692-35401398,
chr21:34888858-34890919~~chr21:35399665-35401305,
chr21:34889120-34891504~~chr21:35399872-35401634,
chr21:34889120-34891504~~chr21:35507809-35509924,
chr21:34889124-34891177~~chr21:35399927-35401584,
chr21:34889146-34892075~~chr21:35399320-35401617,
chr21:34889149-34891526~~chr21:35048126-35049812,
chr21:34889149-34891526~~chr21:35399613-35401825,
chr21:34889149-34891526~~chr21:35839251-35841748,
chr21:34889184-34892059~~chr21:35399810-35401595,
chr21:34889184-34892059~~chr21:35615365-35617187,
chr21:34889184-34892059~~chr21:35838738-35841127,
chr21:34889188-34892063~~chr21:35047029-35048282,
chr21:34889188-34892063~~chr21:35050481-35052295,
chr21:34889188-34892063~~chr21:35399614-35401619,
chr21:34889188-34892063~~chr21:35839343-35841742,
chr21:34889198-34891559~~chr21:35399887-35401622,
chr21:34889210-34891617~~chr21:35399329-35401604,
chr21:34889215-34891125~~chr21:35399911-35401639,
chr21:34889215-34891125~~chr21:35507798-35509438,
chr21:34889215-34891491~~chr21:35026230-35029706,
chr21:34889215-34891491~~chr21:35050056-35052270,
chr21:34889215-34891491~~chr21:35339729-35341143,
chr21:34889215-34891491~~chr21:35367866-35369303,
chr21:34889215-34891491~~chr21:35399637-35401641,
chr21:34889215-34891491~~chr21:35615343-35617201,
chr21:34889216-34892087~~chr21:35204275-35205597,
chr21:34889220-34892087~~chr21:35398191-35399421,
chr21:34889220-34892087~~chr21:35399738-35401521,
chr21:34889220-34892087~~chr21:35507756-35509525,
chr21:34889223-34891142~~chr21:35048216-35049984,
chr21:34889223-34891142~~chr21:35252255-35253863,
chr21:34889223-34891142~~chr21:35399305-35401597,
chr21:34889223-34891142~~chr21:35839105-35841278,
chr21:34889226-34891333~~chr21:35507750-35509614,
chr21:34889230-34891145~~chr21:35399668-35401583,
chr21:34889230-34891145~~chr21:35507406-35509556,
chr21:34889231-34891534~~chr21:35050273-35052269,
chr21:34889231-34891534~~chr21:35399325-35401608,
chr21:34889242-34892124~~chr21:35399900-35402112,
chr21:34889242-34892124~~chr21:35507767-35509947,
chr21:34889242-34892124~~chr21:35577853-35579865,
chr21:34889251-34892128~~chr21:35374172-35375997,
chr21:34889251-34892128~~chr21:35399352-35402534,
chr21:34889251-34892128~~chr21:35507734-35509545,
chr21:34889251-34892128~~chr21:35838780-35841161,
chr21:34889254-34891157~~chr21:35399838-35401610,
chr21:34889261-34891776~~chr21:35398829-35401607,
chr21:34889261-34891776~~chr21:35507740-35509497,
chr21:34889265-34891088~~chr21:35507802-35509464,
chr21:34889270-34892070~~chr21:35399625-35402389,
chr21:34889270-34892070~~chr21:35507719-35509586,
chr21:34889270-34892070~~chr21:35838715-35841129,
chr21:34889280-34891141~~chr21:35399667-35401542,
chr21:34889280-34892057~~chr21:35507840-35509928,
chr21:34889297-34891513~~chr21:35399678-35401615,
chr21:34889298-34892087~~chr21:35399898-35401583,
chr21:34889298-34892087~~chr21:35507789-35509940,
chr21:34889303-34891098~~chr21:35399841-35401521,
chr21:34889367-34892315~~chr21:35398021-35401583,
chr21:34889367-34892315~~chr21:35507729-35509950,
chr21:34889367-34892315~~chr21:35838730-35841126,
chr21:34889375-34890944~~chr21:35839523-35841115,
chr21:34889427-34892109~~chr21:35046768-35049526,
chr21:34889427-34892109~~chr21:35398212-35401570,
chr21:34889427-34892109~~chr21:35507807-35509535,
chr21:34889427-34892109~~chr21:35614047-35617200,
chr21:34889427-34892109~~chr21:35839090-35841121,
chr21:34889484-34890922~~chr21:35399886-35401254,
chr21:34889494-34891026~~chr21:35399649-35401523,
chr21:34889504-34891012~~chr21:35399885-35401523,
chr21:34889513-34890925~~chr21:35507897-35509157,
chr21:34900000-34925000~~chr21:35025000-35050000,
chr21:34900000-34925000~~chr21:35200000-35225000,
chr21:34900000-34925000~~chr21:35375000-35400000,
chr21:34900000-34925000~~chr21:35400000-35425000,