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Basic information

CohesinDB ID: CDBP00417888

Locus: chr21-34897971-34898224

Data sourse: GSE143937, ENCSR153HNT

Cell type: K-562

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 91% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 35%, "15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, CBFA2T2, HDAC1, FOXA2, MTA3, CREM, ID3, ZFX, POU4F2, XBP1, DUX4, STAT1, LEO1, PBX2, UBTF, PRDM10, KDM1A, ERG, RELA, JUNB, ATF3, NEUROD1, GATA4, SMARCA4, ARID1B, ZFP36, GRHL3, ATF4, HMBOX1, TAL1, CBFA2T3, MAX, GATA1, IKZF1, CDK8, RCOR1, NR2F6, NFE2, CDX2, MED1, MAF, CEBPB, GFI1B, PML, TRIM28, CEBPD, KMT2A, NR2F1, NFE2L2, TBL1XR1, EZH2, PKNOX1, ZNF334, SETDB1, STAT5A, JUN, TCF12, SPI1, EP300, HNF4A, DPF2, HDAC2, ZBTB7A, RBM25, CCNT2, SOX6, ATF7, NCOR1, JUND, BRD4, TEAD4, ZNF24

Target gene symbol (double-evidenced CRMs): RCAN1,SMIM11A,SETD4,SIM2,ITSN1,ATP5PO,RUNX1,AP000311.1,CLIC6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000249209, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200, ENSG00000159212, ENSG00000159216, ENSG00000185917, ENSG00000159263,

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Deatailed information for cohesin site CDBP00417888