- Basic information
- CohesinDB ID: CDBP00417905
- Locus: chr21-34937891-34940201
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Data sourse: ENCSR000EDW, GSE206145, GSE101921, GSE206145-NatGen2015, GSE120943, GSE68388, GSE126755
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Cell type: RPE, HMEC, Fibroblast, MCF-10A, Monocytes, Hep-G2, Neutrophil, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 35%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, HMG20A, SOX2, MEIS2, XBP1, HNF1A, FOXA1, HLF, PBX2, LEO1, RXRB, HNRNPK, HDGF, CDK2, MEN1, ATF3, NFIC, CHD7, PRDM1, SMARCE1, TP63, CDX2, MAF, MYOG, THRAP3, TEAD1, TRIM28, ZNF121, BCLAF1, KLF6, NFE2L2, LMO2, ESR1, HNF1B, TP73, HDAC8, CTCF, JUN, TCF12, EP300, ARID5B, LMO1, ZNF157, SOX9, SOX5, DPF2, GATA6, MNT, IRF4, CREB3, SOX6, TEAD4, GATAD2A, POU2F2, CHD8, ZSCAN5D, ZNF263, TOP2A, CDK7, ZNF317, ZBTB17, DUX4, MTA2, STAT1, HINFP, MLLT3, ARID3A, ERG2, ERG, HOXC5, PBX1, SMARCC2, MYC, SMARCA4, ARID1B, RAD21, GRHL3, PROX1, NKX2-1, FOXK2, GABPA, STAT3, IKZF1, NFE2, RCOR1, DACH1, ARNTL, VDR, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, GRHL2, SPI1, IRF1, HDAC2, GATA2, ZNF644, HEXIM1-CDK9, NFIL3, NCOA2, RUNX1, CTNNB1, BCL6, SMC1A, MAFG, LDB1, HDAC1, ZBTB24, SIN3A, SOX13, POU4F2, SMAD3, NFXL1, ERG3, SMARCC1, IRF2, ZNF384, NOTCH1, PRPF4, CREBBP, RUNX2, GATA4, PBX4, DAXX, ARNT, PRDM9, ZEB2, SMAD4, PBX3, CBFA2T3, SUPT5H, CDK8, FOS, MED1, GMEB1, ZEB1, MYB, SCRT2, C11orf30, L3MBTL2, SETDB1, EVI1, MAFK, BCL11A, NR4A1, ZBTB7A, PHIP, TCF3, PRDM6, MLLT1, PPARG, FOXA2, MTA3, SS18, ZSCAN16, GTF2B, WT1, MAFF, MEF2C, ZNF823, CDK9, ZNF318, KDM1A, YY1, RELA, JUNB, HIF1A, GATA3, TAL1, GATA1, MTA1, KLF4, ZNF592, BCL11B, NR2F2, ZNF512, NEUROG2, TP53, PKNOX1, MED, ZNF334, MYOD1, EGR2, ELF3, TBX21, AR, ZBTB40, RXR, HSF1, NCOR1, NOTCH3, BRD4, SCRT1, JUND, RNF2, CUX1, ZZZ3, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1
- Function elements
- Human SNPs: Eosinophil_counts
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops