- Basic information
- CohesinDB ID: CDBP00417906
- Locus: chr21-34940643-34941396
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Data sourse: ENCSR000BLD, GSE98367, ENCSR879KXD, ENCSR153HNT, GSE68388, GSE116344
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Cell type: H1-hESC, RH4, HuCC-T1, K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 42%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, HDAC1, MTA3, POU5F1, HMG20A, SOX2, SS18, SOX13, LEO1, PBX2, MLL4, RELA, HDGF, ZNF384, RUNX2, SMARCA4, CHD7, ZIC2, PROX1, HMBOX1, STAT3, XRCC5, PRDM14, IKZF1, RCOR1, NR3C1, KMT2A, TP53, L3MBTL2, T, BRD2, REST, GATA2, SOX6, RNF2, NOTCH3, BRD4, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops