- Basic information
- CohesinDB ID: CDBP00417910
- Locus: chr21-34949592-34949869
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 56%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYCN, POU5F1, CRY1, ZFX, XBP1, ZBTB48, WT1, ERG3, LEO1, ERG2, ZFHX2, BCL3, ERG, HDGF, CDK6, SP140, GRHL3, PROX1, HMBOX1, ZNF143, SCRT2, EGR2, JUN, ELF3, CTCF, SPI1, ZBTB7A, EGLN2, FLI1, NCOR1, BRD4, SCRT1, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops