- Basic information
- CohesinDB ID: CDBP00417920
- Locus: chr21-34970612-34970915
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Data sourse: GSE126755, ENCSR153HNT
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Cell type: K-562, Neutrophil
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
91% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 45%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, HMG20A, ZNF660, MEIS2, XBP1, FOXA1, LEO1, PBX2, MLL4, HDGF, ATF3, NFIC, THRB, ZNF362, CHD7, RUNX3, ATF4, ZNF273, MECOM, SMARCE1, MITF, BACH2, ZNF629, MAF, JMJD1C, KLF5, BCLAF1, TRIM28, KLF6, NFE2L2, LMO2, ESR1, HNF1B, TP73, CTCF, JUN, TCF12, EP300, E4F1, ARID5B, MNT, LMO1, SOX5, BAF155, DPF2, SOX4, KLF1, TRIM24, IRF4, ZNF407, SOX6, E2F1, TEAD4, FOXA3, KMT2B, GATAD2A, TFAP2C, EED, RBPJ, POU5F1, CDK7, ID3, MTA2, STAT1, SAP130, NBN, HOXC5, ZBTB21, ERG, MYC, SMARCA4, RFX1, ARID1B, RAD21, FOXP2, GRHL3, PROX1, NKX2-1, BATF3, GABPA, STAT3, XRCC5, NKX3-1, IKZF1, NFE2, RCOR1, ARNTL, VDR, ZNF750, CEBPB, NR3C1, STAT5B, KMT2A, CREB1, GRHL2, ZHX2, SPI1, IRF1, HDAC2, INTS13, GATA2, SIX2, SREBF1, ZGPAT, ZNF554, ATF1, ETV5, RUNX1, BCL6, ZBTB24, CEBPA, HDAC1, SMC1A, AFF4, ZFX, SOX13, SMAD3, SMARCC1, MEF2A, RARA, ZNF384, CREBBP, NOTCH1, BRD9, RUNX2, GATA4, ZNF184, PBX4, ARNT, ATF2, ZNF48, HMBOX1, SMAD4, ZEB2, ETV6, FOXM1, PRDM9, FOS, CDK8, HMGXB4, CBFA2T3, MED1, ZEB1, TEAD3, MYB, SCRT2, SMAD1, ZNF3, C11orf30, L3MBTL2, STAT5A, ZNF22, BCL11A, NIPBL, REST, ZBTB7A, ATF7, ASH2L, AFF1, TCF3, SMC3, STAG1, MLLT1, ETV4, SKI, CBFA2T2, ZNF316, CBX3, MTA3, CREM, FOXA2, SS18, MEIS1, MIER2, NFATC1, PPARG, WT1, MEF2C, TCF7, CDK9, HOXB13, KDM1A, YY1, RELA, TARDBP, JUNB, NEUROD1, HIF1A, GATA3, BATF, TAL1, MAX, SPIB, ZNF143, MTA1, GATA1, KLF4, CEBPG, NR2F1, TCF7L2, KDM5B, TP53, PKNOX1, ZNF334, BRD2, ELF3, TBX21, BHLHE40, AR, ZBTB40, ZNF366, HSF1, RNF2, BRD4, JUND, SCRT1, MAZ, MEF2D, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops