- Basic information
- CohesinDB ID: CDBP00417935
- Locus: chr21-35011346-35012385
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Data sourse: ENCSR000EFJ, ENCSR000HPG, ENCSR879KXD, GSE206145, GSE50893, ENCSR000BMY, GSE83726, GSE111537, GSE116344
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Cell type: RPE, RH4, GM12878, GM12891, IMR-90, K-562, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 41%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, MEIS2, FOXA1, PBX2, ZNF28, MLL4, TFAP4, CDK2, LYL1, MEN1, ATF3, NFIC, RUNX3, PRDM1, ATF4, SMARCE1, MYOG, MAF, JMJD1C, TRIM28, BCLAF1, LMO2, SMAD5, MLL, CTCF, TCF12, JUN, EP300, ARID5B, LMO1, DPF2, TRIM24, TEAD4, EED, CDK7, RUNX1T1, TOP2A, ZBTB48, ERG, PBX1, ASCL1, MYC, SMARCA4, ARID1B, RAD21, PROX1, NKX2-1, GABPA, IKZF1, RCOR1, NR3C1, STAT5B, KMT2A, CREB1, SPI1, GATA2, SIX2, FLI1, ETV5, RUNX1, SMC1A, NKX2-2, SIN3A, SMAD3, RARA, NOTCH1, RUNX2, ARNT, DAXX, ATF2, PBX3, CBFA2T3, FOXM1, SUPT5H, CDK8, FOS, ETV6, MED1, PML, MYB, BCL11A, HOXA9, TCF3, STAT2, MLLT1, SKI, ZNF283, FOXA2, MTA3, CREM, MEIS1, SS18, NFATC1, ZSCAN16, ZBED1, MEF2C, TCF7, CDK9, YY1, JUNB, TCF4, BHLHE22, GATA3, OTX2, BATF, TAL1, GATA1, BCL11B, NEUROG2, TP53, PKNOX1, MED, MYOD1, TBX21, AR, ZBTB40, ZBTB26, BRD4, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops