- Basic information
- CohesinDB ID: CDBP00417942
- Locus: chr21-35034190-35035022
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Data sourse: GSE111913, GSE67783, GSE86191
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Cell type: RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 38%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: HMG20A, SOX2, MEIS2, NME2, XBP1, FOXA1, LEO1, PBX2, ZNF596, HDGF, RUNX3, ZSCAN4, MITF, MAF, NFE2L2, ESR1, USF2, CTCF, TCF12, BAF155, SOX5, DPF2, PAX8, RAD51, FOXA3, TFAP2C, EED, POU2F2, CHD8, ZSCAN5D, MYCN, ZNF263, RUNX1T1, ZBTB48, ZSCAN5A, STAT1, SAP130, ERG, MYC, EZH1, SMARCA4, RAD21, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, PRDM14, IKZF1, NFE2, SRSF3, STAT5B, KMT2A, CREB1, EZH2, SPI1, HDAC2, FLI1, NFIL3, RUNX1, MAFG, CBX1, SMC1A, SIN3A, ZFX, SOX13, ZNF770, ERG3, ZBTB2, RUNX2, ARNT, PRDM9, TEAD3, MYB, ZMYM3, ZNF3, C11orf30, USF1, BCL11A, NR4A1, REST, RBM25, BCOR, FOXP1, SMC3, MLLT1, STAG1, CBFA2T2, FOXA2, TBL1X, WT1, HOXB13, YY1, NEUROD1, SP140, ZFP36, OTX2, TAL1, MAX, SPIB, ZNF143, GATA1, TLE3, BCL11B, PKNOX1, ZNF334, MYOD1, ELF3, TBX21, AR, NCOR1, NOTCH3, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): MORC3,CLIC6,SETD4,RCAN1,SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159200,
ENSG00000159212,
ENSG00000159216,
ENSG00000185917,
ENSG00000159256,
- Related loop:
chr21:34350000-34375000~~chr21:35025000-35050000,
chr21:34500000-34525000~~chr21:35025000-35050000,
chr21:34700000-34725000~~chr21:35025000-35050000,
chr21:34725000-34750000~~chr21:35025000-35050000,
chr21:34775000-34800000~~chr21:35025000-35050000,
chr21:34875000-34900000~~chr21:35025000-35050000,
chr21:34889215-34891491~~chr21:35026230-35029706,
chr21:34900000-34925000~~chr21:35025000-35050000,
chr21:35025000-35050000~~chr21:35375000-35400000,
chr21:35025000-35050000~~chr21:35400000-35425000,
chr21:35025000-35050000~~chr21:35500000-35525000,
chr21:35025000-35050000~~chr21:35825000-35850000,
chr21:35025000-35050000~~chr21:35925000-35950000,
chr21:35025000-35050000~~chr21:36025000-36050000,
chr21:35025000-35050000~~chr21:36300000-36325000,