- Basic information
- CohesinDB ID: CDBP00417946
- Locus: chr21-35057234-35058434
-
Data sourse: GSE206145, GSE206145-NatGen2015, GSE50893, ENCSR000BMY
-
Cell type: GM12892, GM2630, Fibroblast, SNYDER, GM18505, GM2610, GM19240, GM12878, GM12891, GM2588, GM18486, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: Mau2,SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, POU2F2, CHD8, MTA3, EBF1, CREM, TOP2A, XBP1, FOXA1, CDK9, YY1, RELA, JUNB, NFIC, CDK6, MYC, RUNX3, CBFB, BATF3, BATF, MECOM, FOXM1, ETV6, MED1, BACH2, CREB1, STAT5A, CTCF, BCL11A, SPI1, TBX21, IRF4, EGLN2, BRD4, TCF3, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:34889188-34892063~~chr21:35050481-35052295,
chr21:34889215-34891491~~chr21:35050056-35052270,
chr21:34889231-34891534~~chr21:35050273-35052269,
chr21:34911415-34913464~~chr21:35050379-35052311,
chr21:35050000-35075000~~chr21:35150000-35175000,
chr21:35050000-35075000~~chr21:35200000-35225000,
chr21:35050000-35075000~~chr21:35225000-35250000,
chr21:35050000-35075000~~chr21:35250000-35275000,
chr21:35050000-35075000~~chr21:35375000-35400000,
chr21:35050000-35075000~~chr21:35400000-35425000,
chr21:35050000-35075000~~chr21:35500000-35525000,
chr21:35050000-35075000~~chr21:35925000-35950000,
chr21:35050018-35052259~~chr21:35339447-35341148,
chr21:35050018-35052259~~chr21:35399872-35401634,
chr21:35050056-35052270~~chr21:35204345-35207196,
chr21:35050056-35052270~~chr21:35226396-35228810,
chr21:35050056-35052270~~chr21:35339729-35341143,
chr21:35050056-35052270~~chr21:35399637-35401641,
chr21:35050107-35052241~~chr21:35221744-35223755,
chr21:35050107-35052241~~chr21:35399417-35401599,
chr21:35050107-35052241~~chr21:35839295-35841164,
chr21:35050273-35052269~~chr21:35399325-35401608,
chr21:35050328-35052241~~chr21:35398177-35399626,
chr21:35050328-35052241~~chr21:35399900-35402112,
chr21:35050328-35052241~~chr21:35507767-35509947,
chr21:35050328-35052241~~chr21:35939333-35941309,
chr21:35050353-35052253~~chr21:35255866-35258344,
chr21:35050353-35052253~~chr21:35377042-35378670,
chr21:35050353-35052253~~chr21:35399885-35401612,
chr21:35050353-35052253~~chr21:35939344-35941327,
chr21:35050370-35052249~~chr21:35226507-35228618,
chr21:35050370-35052249~~chr21:35339746-35341172,
chr21:35050371-35052276~~chr21:35399649-35401523,
chr21:35050375-35052249~~chr21:35507829-35509267,
chr21:35050379-35052311~~chr21:35399352-35402534,
chr21:35050382-35052264~~chr21:35399641-35401580,
chr21:35050390-35052306~~chr21:35202972-35206306,
chr21:35050390-35052306~~chr21:35939302-35941416,
chr21:35050390-35052342~~chr21:35374616-35376147,
chr21:35050390-35052342~~chr21:35399848-35401817,
chr21:35050390-35052342~~chr21:35614293-35617009,
chr21:35050395-35052265~~chr21:35399674-35401602,
chr21:35050423-35052303~~chr21:35339770-35341171,
chr21:35050423-35052303~~chr21:35399887-35401622,
chr21:35050424-35052239~~chr21:36027752-36029478,
chr21:35050426-35052300~~chr21:35399625-35402389,
chr21:35050457-35052285~~chr21:35398212-35401570,
chr21:35050457-35052285~~chr21:35939398-35941355,
chr21:35050481-35052295~~chr21:35339683-35341161,
chr21:35050481-35052295~~chr21:35399614-35401619,
chr21:35050508-35052311~~chr21:35399725-35401527,
chr21:35050508-35052311~~chr21:36027802-36029492,
chr21:35050528-35052327~~chr21:35339764-35341191,
chr21:35050528-35052327~~chr21:35399898-35401583,
chr21:35050531-35052287~~chr21:35399738-35401521,
chr21:35050531-35052287~~chr21:35839087-35841133,
chr21:35052915-35054121~~chr21:35398829-35401607,