- Basic information
- CohesinDB ID: CDBP00417947
- Locus: chr21-35059268-35061104
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Data sourse: GSE206145-NatGen2015, GSE50893, GSE165895
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Cell type: GM12892, Fibroblast, HFFc6, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NR3C1, GATA2, MYB, MCM3, RUNX3, ARNT, TAL1, GATA3, STAT3, PBX3, CDK9, TCF12, ZNF24, MNT
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Plateletcrit
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops