Deatailed information for cohesin site CDBP00417950
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- Basic information
- CohesinDB ID: CDBP00417950
- Locus: chr21-35067244-35067541
- Data sourse: GSE206145-NatGen2015, GSE67783
- Cell type: Fibroblast, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RELA, AR, ZNF384, GATA2, ZNF316, FOXA2, TRIM28, LDB1, POU2F3, HIF1A, FOXA1, HEXIM1-CDK9, HOXB13, KDM1A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop: chr21:35050000-35075000~~chr21:35150000-35175000, chr21:35050000-35075000~~chr21:35200000-35225000, chr21:35050000-35075000~~chr21:35225000-35250000, chr21:35050000-35075000~~chr21:35250000-35275000, chr21:35050000-35075000~~chr21:35375000-35400000, chr21:35050000-35075000~~chr21:35400000-35425000, chr21:35050000-35075000~~chr21:35500000-35525000, chr21:35050000-35075000~~chr21:35925000-35950000,
Tools:
- Assay
