- Basic information
- CohesinDB ID: CDBP00417952
- Locus: chr21-35070148-35070697
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, CBX3, ZFX, POU4F2, XBP1, RELA, ARNT, HIF1A, MAX, ZNF143, GATA1, TEAD3, TRIM28, ZMYM3, EZH2, STAG1, USF1, IKZF5, RBAK, RBM25, NOTCH3, BCOR, MAZ, SMC3, ETV5
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Stroke
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops