- Basic information
- CohesinDB ID: CDBP00417953
- Locus: chr21-35071038-35073725
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Data sourse: ENCSR000EFJ, ENCSR230ZWH, GSE67783, GSE72082, GSE165895, GSE86191, ENCSR000HPG, ENCSR000BLS, GSE206145-NatGen2015, GSE135093, ENCSR153HNT, GSE83726, GSE116344, GSE50893, ENCSR917QNE
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Cell type: GM12892, Fibroblast, HCT-116, RH4, Hep-G2, SNYDER, GM2610, GM2588, GM12891, IMR-90, K-562, Liver, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, FOXA2, POU5F1, EBF1, NFATC1, SOX2, SS18, XBP1, SMAD3, FOXA1, ERG3, ERG2, HOXB13, TBP, ZFHX2, BCL3, ZNF19, MEF2A, SMARCC1, ASCL1, JUNB, NFIC, CDK6, RUNX3, PBX4, ATF2, GATA3, BATF, XRCC5, FOXM1, PBX3, FOS, MAX, BACH2, ZFP69B, NR3C1, EZH2, ESR1, KLF9, EGR2, CTCF, ZHX2, TCF12, BCL11A, SPI1, JUN, EP300, AR, GATA2, RXR, POU2F3, ZNF777, JUND, BRD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Hemoglobin_concentration
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops