- Basic information
- CohesinDB ID: CDBP00417954
- Locus: chr21-35075427-35076293
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Data sourse: GSE98367, ENCSR000BLY, ENCSR879KXD, GSE206145-NatGen2015, GSE120943, GSE116344
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Cell type: Fibroblast, RH4, Monocytes, SK-N-SH, K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF283, SMC1A, POU2F2, HDAC1, CREM, ZNF660, ZNF335, SIN3A, ZNF600, ZNF692, CTBP1, SMAD3, NFATC1, STAT1, FOXA1, ZNF205, ZBTB48, PBX2, BCL3, KDM1A, ZBTB21, RELA, JUNB, ATF3, MYC, NFIC, SMARCA4, GATA4, ARID1B, RUNX3, SMARCE1, PBX4, ATF2, GATA3, ZEB2, BATF, TAL1, CBFA2T3, ETV6, SPIB, FOS, GATA1, RCOR1, CDK8, NFE2, PBX3, ARNTL, CEBPG, CEBPB, MAF, GFI1B, TEAD1, CEBPD, STAT5B, PIAS1, PKNOX1, KLF9, KLF8, JUN, TCF12, CTCF, SPI1, ZNF257, DPF2, HDAC2, REST, GATA2, ATF7, FLI1, NR2C2, BRD4, JUND, TCF3, GABPA, E2F1, ZNF350, MRTFB, TEAD4, ATF1, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops