- Basic information
- CohesinDB ID: CDBP00417973
- Locus: chr21-35118631-35118943
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Data sourse: GSE116344, ENCSR153HNT
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Cell type: K-562, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, SMC1A, ZNF263, POU5F1, TOP2A, ZFX, XBP1, ZNF317, DUX4, WT1, ZBTB48, ERG3, HOXB13, ZFHX2, ERG, YY1, RELA, ATF3, MYC, RUNX2, ZFP64, NFIC, RAD21, GRHL3, NFIB, ATF2, GABPA, STAT3, MAX, XRCC5, GATA1, ZNF143, NFE2, ZNF398, MED1, EZH2, KLF9, C11orf30, EGR2, CTCF, BCL11A, AR, REST, SIX2, BRD4, JUND, CLOCK, ZNF316
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops