- Basic information
- CohesinDB ID: CDBP00417975
- Locus: chr21-35126672-35127351
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Data sourse: GSE138405, GSE116344, GSE83726
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Cell type: Hela-Kyoto, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, POU5F1, TOP2A, MEIS2, XBP1, FOXA1, ZBTB33, ZNF823, PBX2, ERG, RELA, MYC, MCM3, RAD21, GRHL3, HIF1A, GABPA, TRIM28, NEUROG2, EZH2, NCOA1, MYOD1, CTCF, BCL11A, AR, REST, NOTCH3, BRD4, PHIP, EHMT2
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
- Related loop:
chr21:34350000-34375000~~chr21:35100000-35125000,
chr21:34350000-34375000~~chr21:35125000-35150000,
chr21:34875000-34900000~~chr21:35125000-35150000,
chr21:35000000-35025000~~chr21:35100000-35125000,
chr21:35100000-35125000~~chr21:35300000-35325000,
chr21:35100000-35125000~~chr21:35825000-35850000,
chr21:35100000-35125000~~chr21:35925000-35950000,
chr21:35125000-35150000~~chr21:35250000-35275000,
chr21:35125000-35150000~~chr21:35375000-35400000,
chr21:35125000-35150000~~chr21:35825000-35850000,