- Basic information
- CohesinDB ID: CDBP00417987
- Locus: chr21-35154703-35155159
-
Data sourse: GSE143937, ENCSR000BKV, ENCSR879KXD, GSE206145-NatGen2015, ENCSR153HNT, GSE130135, GSE25021
-
Cell type: K-562, Hep-G2, Fibroblast, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 91%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, CBFA2T2, FOXA2, CBX3, CREM, HDAC1, BRD3, CTBP1, GTF2B, ZBTB48, FOXA1, ZBTB33, PBX2, TBP, ZKSCAN1, YY1, RELA, HDGF, ZNF384, JUNB, ATF3, NEUROD1, MYC, SMARCA4, CDK6, ARID1B, RAD21, HIF1A, ATF4, NKX2-1, ATF2, SMC3, HMBOX1, MGA, SMARCE1, CBFA2T3, TAL1, MAX, GATA1, ZNF143, RCOR1, NR2F6, CEBPG, CEBPB, GFI1B, NR2F2, CEBPD, NR2F1, NFE2L2, ZBTB6, NCOA1, L3MBTL2, JUN, TCF12, CTCF, EP300, SPI1, BRD2, BCL11A, AR, DPF2, HDAC2, REST, GATA2, E2F6, TRIM24, EGR1, SOX6, ATF7, NCOR1, NOTCH3, BRD4, JUND, SMARCA5, MAZ, TEAD4, ATF1, EHMT2, TFAP2C
- Target gene symbol (double-evidenced CRMs): RUNX1,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
- Related loop:
chr21:34350000-34375000~~chr21:35125000-35150000,
chr21:34350000-34375000~~chr21:35150000-35175000,
chr21:34850000-34875000~~chr21:35150000-35175000,
chr21:34875000-34900000~~chr21:35125000-35150000,
chr21:34875000-34900000~~chr21:35150000-35175000,
chr21:35050000-35075000~~chr21:35150000-35175000,
chr21:35125000-35150000~~chr21:35250000-35275000,
chr21:35125000-35150000~~chr21:35375000-35400000,
chr21:35125000-35150000~~chr21:35825000-35850000,