- Basic information
- CohesinDB ID: CDBP00417989
- Locus: chr21-35157805-35158338
-
Data sourse: GSE138405, ENCSR153HNT
-
Cell type: K-562, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 59%,
"9_Het": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PPARG, FOXA2, NKX2-2, LDB1, HNF1A, DUX4, FOXA1, ZBTB33, HOXB13, PRDM10, GATA4, CHAMP1, RAD21, PBX4, GRHL3, RXRA, NKX2-1, STAT3, CDX2, KLF4, CEBPB, TRIM28, SCRT2, HNF1B, ZNF652, SETDB1, ELF3, SP1, HNF4A, GATA6, TRIM24, POU2F3, ZNF350, ZNF280A, ZNF554, CC2D1A
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops