- Basic information
- CohesinDB ID: CDBP00417991
- Locus: chr21-35163008-35163907
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Data sourse: GSE138405, GSE85526, GSE206145-NatGen2015, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HEKn, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, SMC1A, MAFG, FOXA2, POU5F1, EBF1, ZNF316, SOX2, SMAD3, MAFF, DUX4, FOXA1, KDM1A, ERG, RARA, JUNB, MYC, CHD7, PBX4, GATA3, STAT3, MAX, TP63, FOS, ZNF750, CEBPB, TEAD1, NEUROG2, C11orf30, GRHL2, NFKB1, JUN, AR, BRD4, ZNF350, TFAP2C
- Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops