Browse_each

Basic information

CohesinDB ID: CDBP00418015

Locus: chr21-35248780-35249030

Data sourse: GSE206145-NatGen2015, ENCSR153HNT

Cell type: K-562, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 84% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 74%, "14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MED1, GATA2, EGLN2, FOXA1, SMC3

Target gene symbol (double-evidenced CRMs): SMIM11A,RUNX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159216,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00418015

CDBP00418015 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00418015

Current terms

Suggested terms

Custom term