- Basic information
- CohesinDB ID: CDBP00418027
- Locus: chr21-35281822-35282831
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Data sourse: ENCSR000BLD, GSE67783, GSE98367, ENCSR000EGW, GSE206145-NatGen2015, GSE120943, GSE103477, GSE116344
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Cell type: MDM, H1-hESC, Fibroblast, RH4, Monocytes, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 79%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, ZBTB24, HDAC1, RUNX1T1, CTBP1, STAT1, MEF2C, KDM1A, RELA, SMARCA4, RAD21, ATF2, ZEB2, IKZF1, CDK8, ZNF320, VDR, KLF6, TP53, USF2, MYOD1, EVI1, USF1, SPI1, HES1, HDAC2, RXR, SOX6, RNF2, AFF1, TEAD4, KMT2B
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops