- Basic information
- CohesinDB ID: CDBP00418029
- Locus: chr21-35283848-35284659
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Data sourse: ENCSR230ZWH, GSE86191, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE83726, GSE116344
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Cell type: Fibroblast, HCT-116, Monocytes, RH4, K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, LCORL, XBP1, FOXA1, ATF3, NFIC, ZFP64, CTCFL, ELF1, NFE2L2, ESR1, OCA2, JUN, CTCF, GATA6, DPF2, ZNF528, TFAP2C, POU2F2, CHD8, ZSCAN5D, POU5F1, ID3, CTBP1, ZBTB48, ZSCAN5A, ZNF134, TBP, ERG, SMARCC2, MYC, EZH1, SMARCA4, ARID1B, RAD21, GRHL3, RXRA, STAT3, XRCC5, IKZF1, NFE2, RCOR1, ARNTL, CEBPB, EZH2, ZNF652, SPI1, ZSCAN29, MAFG, SMC1A, CRY1, ZFX, POU4F2, SMAD3, ZNF384, RUNX2, CDK6, GATA4, ZNF184, NFIB, ZNF10, FOS, CDK8, SCRT2, C11orf30, REST, SMC3, EBF1, MAFF, HOXB13, YY1, RELA, JUNB, TCF4, HIF1A, TAL1, MAX, ZNF143, GATA1, ZNF592, NCOA3, ZNF334, MYOD1, ELF3, BRD2, AR, RNF2, NOTCH3, JUND, SCRT1, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops