- Basic information
- CohesinDB ID: CDBP00418034
- Locus: chr21-35292004-35292748
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Data sourse: GSE116344, GSE138105
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Cell type: SLK, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, ZNF496, LDB1, FOXA2, MEIS1, MEIS2, XBP1, ZSCAN21, SMAD3, FOXA1, CBX8, PBX2, RUNX2, MYC, ZNF184, RUNX3, PRDM1, PBX4, HIF1A, PROX1, NKX2-1, PRDM9, STAT3, MAX, PAX5, ZNF143, MED1, NR3C1, CEBPB, NCOA3, SPDEF, KMT2A, EZH2, ESR1, HNF1B, CTCF, ZHX2, USF1, SPI1, AR, BRD4, PHIP, TCF3
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops