- Basic information
- CohesinDB ID: CDBP00418036
- Locus: chr21-35295566-35296287
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Data sourse: GSE50893, GSE120943, ENCSR153HNT
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Cell type: K-562, Monocytes, GM18505
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, ZSCAN5C, SOX2, MEIS2, XBP1, FOXA1, PBX2, MLL4, TFAP4, ATF3, ZC3H8, CHD7, PAX5, TP63, ZNF736, CDX2, KLF5, KLF6, ESR1, CTCF, JUN, EP300, SOX9, GATA6, SOX6, E2F1, PDX1, TFAP2C, NANOG, CHD8, POU5F1, TOP2A, CTBP1, MTA2, HOXC5, ASCL1, ONECUT1, MYC, EOMES, RAD21, LHX2, GRHL3, PROX1, STAT3, APC, RCOR1, ARNTL, ZNF750, CEBPB, NR3C1, IRF1, HDAC2, ZNF777, CTNNB1, SMC1A, ZBTB24, CEBPA, HDAC1, SOX13, SMAD3, ZNF384, GATA4, OSR2, PBX4, ARNT, ZEB2, CBFA2T3, FOS, CDK8, MED1, ZEB1, NIPBL, SP1, HNF4A, POU2F3, PHIP, SMC3, CBX3, PAF1, CDK9, KDM1A, YY1, RELA, TCF4, HIF1A, ZIC2, MAX, NRIP1, KLF4, GFI1B, TCF7L2, KDM5B, TP53, PKNOX1, ZNF334, MYOD1, BRD2, ELF3, T, PAX3-FOXO1, AR, ZBTB40, RXR, ZBTB42, NCOR1, NOTCH3, BRD4, JUND, AHR
- Target gene symbol (double-evidenced CRMs): SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops